Jatropha Genome Database

JcCB0087221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0087221.20 - phase: 0 /partial
         (272 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031551001 assembled CDS                                       385   e-108
GSVIVT01015297001 assembled CDS                                       250   6e-67
GSVIVT01016971001 assembled CDS                                       230   5e-61
GSVIVT01009899001 assembled CDS                                       213   8e-56
GSVIVT01002667001 assembled CDS                                       196   1e-50
GSVIVT01006129001 assembled CDS                                       141   4e-34
GSVIVT01034893001 assembled CDS                                        49   2e-06

>GSVIVT01031551001 assembled CDS
          Length = 523

 Score =  385 bits (990), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/258 (74%), Positives = 210/258 (81%), Gaps = 1/258 (0%)

Query: 1   VNDTVGSLALGHYCDADTVAAVIIGTGTNACYLERADAIIKCQGLLTTSGGMVVNMEWGN 60
           VNDTVG+LALGHY D DTVAAVIIGTGTNACYLER DAIIKCQGLLTTSGGMVVNMEWGN
Sbjct: 228 VNDTVGTLALGHYNDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGN 287

Query: 61  FWSSHLPRTSYDIDLDVESLNPNDQGFEKMISGMYLGDIVRRVILRMSQETDIFGPVSSR 120
           FWSSHLPRTSYDIDLD +S NPNDQGFEKMISGMYLGDIVRRVILRMSQE+DIFGPVSSR
Sbjct: 288 FWSSHLPRTSYDIDLDGDSPNPNDQGFEKMISGMYLGDIVRRVILRMSQESDIFGPVSSR 347

Query: 121 LTTPFILETYLVVDMHEDDSPDLQEVARILKEILEITEIPLKARKLVVRICDVVTXXXXX 180
           L+ PFIL T  + DMH D+SP+L EVARILKE L+I ++PLK RKLVV++CDVVT     
Sbjct: 348 LSMPFILSTPSMADMHADESPELMEVARILKEDLQIPDVPLKVRKLVVKVCDVVTRRAAR 407

Query: 181 XXXXGIVGILKKXXX-XXXXXXXXXXXXXXXKMKRTVVAIEGDLYTTYTMFREYLHEALN 239
               GIVGILKK                   KM+RTVVA++G LYT YTMF+EYLHEAL 
Sbjct: 408 LAAAGIVGILKKIGRDGSGGVASGRSRGSDGKMRRTVVAMDGSLYTRYTMFKEYLHEALC 467

Query: 240 EILGEDVAPHVILKATED 257
           EILGE+VA +VILK TED
Sbjct: 468 EILGEEVAQYVILKVTED 485


>GSVIVT01015297001 assembled CDS
          Length = 436

 Score =  250 bits (638), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 132/258 (51%), Positives = 167/258 (64%), Gaps = 10/258 (3%)

Query: 1   VNDTVGSLALGHYCDADTVAAVIIGTGTNACYLERADAIIKCQGLLTTSGGMVVNMEWGN 60
           VNDT+G+LA G Y D D VAAVI+GTGTNA Y+ERA +I K  GLL  SG MV+NMEWGN
Sbjct: 167 VNDTIGTLAGGRYYDQDVVAAVILGTGTNAAYVERAQSIPKWHGLLPKSGDMVINMEWGN 226

Query: 61  FWSSHLPRTSYDIDLDVESLNPNDQGFEKMISGMYLGDIVRRVILRMSQETDIFG-PVSS 119
           F SSHLP T YD  LD ESLNP +Q FEK+ISGMYLGDIVRRV+ RM++E D+FG  V  
Sbjct: 227 FRSSHLPLTEYDQVLDAESLNPGEQIFEKIISGMYLGDIVRRVLCRMAEEADLFGDTVPP 286

Query: 120 RLTTPFILETYLVVDMHEDDSPDLQEVARILKEILEITEIPLKARKLVVRICDVVTXXXX 179
           +L  PFIL T  +  MH D SPDL+ V   LK+IL+I    LK RK+V+ +CD+V     
Sbjct: 287 KLKIPFILRTPDMSAMHHDTSPDLRVVGSKLKDILDIPNTSLKTRKVVIELCDIVATRGA 346

Query: 180 XXXXXGIVGILKKXXXXXXXXXXXXXXXXXXKMKRTVVAIEGDLYTTYTMFREYLHEALN 239
                GI+GILKK                    + +V+A++G LY  YT FR  L   L 
Sbjct: 347 RLSAAGILGILKK---------LGRDTMKEGDKQNSVIALDGGLYEHYTEFRTCLESTLK 397

Query: 240 EILGEDVAPHVILKATED 257
           E+LG +V+ ++++K + D
Sbjct: 398 ELLGAEVSDNIVIKHSND 415


>GSVIVT01016971001 assembled CDS
          Length = 448

 Score =  230 bits (587), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 119/258 (46%), Positives = 166/258 (64%), Gaps = 10/258 (3%)

Query: 1   VNDTVGSLALGHYCDADTVAAVIIGTGTNACYLERADAIIKCQGLLTTSGGMVVNMEWGN 60
           VNDT+G+LA G Y + D V AVI+GTG+NA Y+ERA AI K QGLL  SG MV+NMEWGN
Sbjct: 167 VNDTIGTLAGGRYFNDDVVVAVILGTGSNAAYVERAQAIPKWQGLLPKSGDMVINMEWGN 226

Query: 61  FWSSHLPRTSYDIDLDVESLNPNDQGFEKMISGMYLGDIVRRVILRMSQETDIFGP-VSS 119
           F SSHLP T YD  +D++SLNP +Q FEK++SGMYLG+I+RRV+LRM++E   FG  V  
Sbjct: 227 FRSSHLPLTEYDRAMDIDSLNPGEQIFEKLVSGMYLGEILRRVLLRMAEEAAFFGATVPP 286

Query: 120 RLTTPFILETYLVVDMHEDDSPDLQEVARILKEILEITEIPLKARKLVVRICDVVTXXXX 179
           +L  PFIL T  +  MH D S +L+ V   +KEIL I++ PLK RK+VV++C++V     
Sbjct: 287 KLKIPFILRTPDMSSMHHDTSVNLKVVGIKMKEILGISDTPLKMRKIVVQLCNIVATRGA 346

Query: 180 XXXXXGIVGILKKXXXXXXXXXXXXXXXXXXKMKRTVVAIEGDLYTTYTMFREYLHEALN 239
                 I G+LKK                  + ++TV+A++G L+  Y+ + + L   L 
Sbjct: 347 RLAAAAIFGVLKK---------MGRDTVRPGEKQKTVIAMDGGLFEHYSEYSKCLENTLR 397

Query: 240 EILGEDVAPHVILKATED 257
           E++GE V+  + ++   D
Sbjct: 398 ELVGEQVSESLFIEHAND 415


>GSVIVT01009899001 assembled CDS
          Length = 411

 Score =  213 bits (542), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 162/258 (62%), Gaps = 12/258 (4%)

Query: 1   VNDTVGSLALGHYCDADTVAAVIIGTGTNACYLERADAIIKCQGLLTTSGGMVVNMEWGN 60
           VNDTVG+LA   Y D D + AVI+GTGTNACY+ER D I K QG +++SG  +++ EWG 
Sbjct: 149 VNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDVIPKLQGQMSSSGRTIISTEWGA 208

Query: 61  FWSSHLPRTSYDIDLDVESLNPNDQGFEKMISGMYLGDIVRRVILRMSQETDIFGP-VSS 119
           F S+ LP T +D D+D  S+NP +Q FEK ISGMYLG+IVRRV+L+M++   +FG  VS 
Sbjct: 209 F-SNGLPLTEFDRDMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAEAGALFGEYVSE 267

Query: 120 RLTTPFILETYLVVDMHEDDSPDLQEVARILKEILEITEIPLKARKLVVRICDVVTXXXX 179
           +L+TPFIL T  +  M +D+S  L  V  IL ++  +    L  RK+VV +CD +     
Sbjct: 268 KLSTPFILRTPDICAMQQDNSDHLDAVGAILYDVAGVKS-DLSVRKMVVEVCDTIVKRGG 326

Query: 180 XXXXXGIVGILKKXXXXXXXXXXXXXXXXXXKMKRTVVAIEGDLYTTYTMFREYLHEALN 239
                GIVGIL+K                    KRTVVA++G LY  Y  +R YL EA+ 
Sbjct: 327 RLAGAGIVGILQKMEEDSKDLIFG---------KRTVVAMDGGLYENYPQYRRYLKEAVT 377

Query: 240 EILGEDVAPHVILKATED 257
           E+LG +++ +V+++ ++D
Sbjct: 378 ELLGLEMSKNVVIEHSKD 395


>GSVIVT01002667001 assembled CDS
          Length = 479

 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/254 (41%), Positives = 149/254 (58%), Gaps = 15/254 (5%)

Query: 1   VNDTVGSLALGHYCDADTVAAVIIGTGTNACYLERADAIIKCQGLLTTSGGMVVNMEWGN 60
           V D +G LA G Y + DTVAA+ +G  T A Y+E   A+ + Q     S  MV++M+WGN
Sbjct: 217 VEDAIGHLAGGRYYNRDTVAAITLGMATTAAYVEPTQAVPEYQSSSNKSSEMVISMDWGN 276

Query: 61  FWSSHLPRTSYDIDLDVESLNPNDQGFEKMISGMYLGDIVRRVILRMSQETDIFGP-VSS 119
           F S HLP T +D  LD ES NP  + FEK+ SGMYLG+IVRRV+L+M+QET +FG  V  
Sbjct: 277 FNSCHLPITEFDTFLDAESSNPGSRIFEKLTSGMYLGEIVRRVLLKMAQETALFGEDVPP 336

Query: 120 RLTTPFILETYLVVDMHEDDSPDLQEVARILKEILEITEIPLKARKLVVRICDVVTXXXX 179
           +L TP++L +  +  MH+D S D + V   L EI  IT     AR++V  +CD+V     
Sbjct: 337 KLRTPYLLRSPDMAAMHQDTSEDHEVVHEKLMEIFRITNSTPLAREVVAEVCDIVAERGA 396

Query: 180 XXXXXGIVGILKKXXXXXXXXXXXXXXXXXXKMKRTVVAIEGDLYTTYTMFREYLHEALN 239
                GIVGI KK                  + KR+ V +EG LY  Y +FR Y+H ++ 
Sbjct: 397 RLAGAGIVGITKK--------------LGRIENKRSAVTVEGGLYEHYRVFRNYMHSSVW 442

Query: 240 EILGEDVAPHVILK 253
           E+LG +++ +V+++
Sbjct: 443 EMLGNELSDNVVIE 456


>GSVIVT01006129001 assembled CDS
          Length = 202

 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/194 (39%), Positives = 113/194 (58%), Gaps = 15/194 (7%)

Query: 63  SSHLPRTSYDIDLDVESLNPNDQGFEKMISGMYLGDIVRRVILRMSQETDIFGP-VSSRL 121
           S HLP T +D  LD ES NP  + FEK+ SGMYLG+IVRRV+L+M+QET +FG  V  +L
Sbjct: 2   SCHLPITEFDTFLDAESSNPGSRIFEKLTSGMYLGEIVRRVLLKMAQETALFGEDVPPKL 61

Query: 122 TTPFILETYLVVDMHEDDSPDLQEVARILKEILEITEIPLKARKLVVRICDVVTXXXXXX 181
            TP++L +  +  MH+D S D + V   L EI  IT     AR++V  +CD+V       
Sbjct: 62  RTPYLLRSPDMAAMHQDTSEDHEVVHEKLMEIFRITNSTPLAREVVAEVCDIVAERGARL 121

Query: 182 XXXGIVGILKKXXXXXXXXXXXXXXXXXXKMKRTVVAIEGDLYTTYTMFREYLHEALNEI 241
              GIVGI KK                  + KR+ + +EG LY  Y +FR Y+H ++ E+
Sbjct: 122 AGAGIVGITKK--------------LGRIENKRSAITVEGGLYEHYRVFRNYMHSSVWEM 167

Query: 242 LGEDVAPHVILKAT 255
           LG +++ +V+++ +
Sbjct: 168 LGNELSDNVVIEHS 181


>GSVIVT01034893001 assembled CDS
          Length = 61

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 94  MYLGDIVRRVILRMSQETDIF-GPVSSRLTTPFILETYLVVDMHEDDSPD 142
           MYLG+IVRRV+L+M+QET +F   V S+  TP +L +  +V MH+D S D
Sbjct: 1   MYLGEIVRRVLLKMAQETSLFVEDVPSKPRTPCLLRSLDMVVMHQDTSED 50