Jatropha Genome Database

JcCB0087221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0087221.10 - phase: 0 
         (118 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031548001 assembled CDS                                       117   1e-27

>GSVIVT01031548001 assembled CDS
          Length = 392

 Score =  117 bits (293), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/69 (79%), Positives = 57/69 (82%), Gaps = 2/69 (2%)

Query: 1  MATVNNPKSAATANVNKGKKRKQRYLPHNKPVKKKGAYPLHPGVQGFFITCDGGRERQAS 60
          MAT N  K+    N  K KKRKQRYLPHNKPVKKKG YPLHPGVQGFFITCDGGRERQAS
Sbjct: 1  MATEN--KANPNPNTTKNKKRKQRYLPHNKPVKKKGGYPLHPGVQGFFITCDGGRERQAS 58

Query: 61 HEAINVIDS 69
           EA+NVIDS
Sbjct: 59 REALNVIDS 67