Jatropha Genome Database

JcCB0086771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0086771.10 - phase: 1 /pseudo/partial
         (415 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012643001 assembled CDS                                       381   e-106
GSVIVT01030605001 assembled CDS                                       365   e-101
GSVIVT01027508001 assembled CDS                                       282   2e-76
GSVIVT01010600001 assembled CDS                                       233   9e-62
GSVIVT01017073001 assembled CDS                                       206   1e-53
GSVIVT01013073001 assembled CDS                                       203   1e-52
GSVIVT01029396001 assembled CDS                                       188   4e-48
GSVIVT01035238001 assembled CDS                                       181   7e-46
GSVIVT01001986001 assembled CDS                                       170   9e-43
GSVIVT01001987001 assembled CDS                                        78   6e-15

>GSVIVT01012643001 assembled CDS
          Length = 726

 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/214 (87%), Positives = 197/214 (92%)

Query: 200 TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVFEFLSDENHR 259
           T H WTTLS +G+DDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPK+VF+FL  EN R
Sbjct: 512 TTHTWTTLSGSGADDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKRVFDFLRAENSR 571

Query: 260 SEWDILSNGGQVQEMAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCTDSTGSYVIY 319
           SEWDILSNGG VQEMAHIANGRDPGN VSLLRVNSANSSQSNMLILQESCTD TGSYVIY
Sbjct: 572 SEWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCTDPTGSYVIY 631

Query: 320 APVDIAAMNIVLSGGDPDYVALLPSGFAILPDGPEYNPGGSLDVGSGGALLTVAFQILVD 379
           APVDI AMN+VLSGGDPDYVALLPSGFAILPDG   + GG LDVGSGG+LLTVAFQILVD
Sbjct: 632 APVDIVAMNVVLSGGDPDYVALLPSGFAILPDGAVLHGGGILDVGSGGSLLTVAFQILVD 691

Query: 380 SVPTAKLSLGSVATVNNLIKCTVERIKAAVSSDN 413
           S PTAKLSLGSVATVN+LIKCTVERIKAAVS +N
Sbjct: 692 SAPTAKLSLGSVATVNSLIKCTVERIKAAVSCEN 725


>GSVIVT01030605001 assembled CDS
          Length = 757

 Score =  365 bits (938), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/214 (84%), Positives = 196/214 (91%)

Query: 200 TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVFEFLSDENHR 259
           TAH WTTLS +G+DDVRVMTRKS+DDPGRPPGIVLSAATSFW+PVPPK+VF+FL DEN R
Sbjct: 543 TAHTWTTLSGSGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSR 602

Query: 260 SEWDILSNGGQVQEMAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCTDSTGSYVIY 319
           SEWDILSNGG VQEMAHIANG+D GN VSLLRVNSANSSQSNMLILQESCTDST S+VIY
Sbjct: 603 SEWDILSNGGVVQEMAHIANGQDTGNCVSLLRVNSANSSQSNMLILQESCTDSTASFVIY 662

Query: 320 APVDIAAMNIVLSGGDPDYVALLPSGFAILPDGPEYNPGGSLDVGSGGALLTVAFQILVD 379
           APVD+ AMN+VL+GGDPDYVALLPSGFAILPDG   + G   +VGSGG+LLTVAFQILVD
Sbjct: 663 APVDVVAMNMVLNGGDPDYVALLPSGFAILPDGTTAHGGVIGEVGSGGSLLTVAFQILVD 722

Query: 380 SVPTAKLSLGSVATVNNLIKCTVERIKAAVSSDN 413
           SVPTAKLSLGSVATVNNLI CTV+RIKAAVS +N
Sbjct: 723 SVPTAKLSLGSVATVNNLIACTVDRIKAAVSCEN 756


>GSVIVT01027508001 assembled CDS
          Length = 771

 Score =  282 bits (722), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 142/222 (63%), Positives = 174/222 (78%), Gaps = 8/222 (3%)

Query: 200 TAHAWTTLSATGSD-DVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVFEFLSDENH 258
           T H W  L A   D DVRVMTRKS+DDPG PPGIVLSAATS W+PV P+++F+FL DE  
Sbjct: 550 TVHKWNKLCAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERL 609

Query: 259 RSEWDILSNGGQVQEMAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCTDSTGSYVI 318
           RSEWDILSNGG +QEMAHIA G+D GN VSLLR ++ N++QS+MLILQE+C D+ GS V+
Sbjct: 610 RSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVV 669

Query: 319 YAPVDIAAMNIVLSGGDPDYVALLPSGFAILPDGP-EYNPGGSLDVGSG------GALLT 371
           YAPVDI AM++V++GGD  YVALLPSGFAI+PDGP    P   +   SG      G+LLT
Sbjct: 670 YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGPNSGVHTNSGGPNRVSGSLLT 729

Query: 372 VAFQILVDSVPTAKLSLGSVATVNNLIKCTVERIKAAVSSDN 413
           VAFQILV+S+PTAKL++ SV TVNNLI CTV++IKAA+  ++
Sbjct: 730 VAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 771


>GSVIVT01010600001 assembled CDS
          Length = 885

 Score =  233 bits (595), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 117/211 (55%), Positives = 158/211 (74%), Gaps = 9/211 (4%)

Query: 200 TAHAWTTLS-ATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVFEFLSDENH 258
           T   W  L  A+  +DV+VMTRKSM+ PG PPG++LSAATS W+P+  +++F FL DE  
Sbjct: 447 TVRMWNKLHVASLGEDVKVMTRKSMNIPGEPPGVILSAATSVWMPIMHQQLFNFLRDERQ 506

Query: 259 RSEWDILSNGGQVQEMAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCTDSTGSYVI 318
           RS+WDILSNGG +QEM HI  G+   N VSLLR N+ N + + MLILQE+  D++GS ++
Sbjct: 507 RSKWDILSNGGPMQEMIHIPKGQTSSNCVSLLRPNARNQNDNTMLILQETWADASGSLIV 566

Query: 319 YAPVDIAAMNIVLSGGDPDYVALLPSGFAILPDGPEYNPGGSLDVGSGGALLTVAFQILV 378
           YAP+D+A+M  V++GGD  +VALLPSGFAI+PD       GS + GS G+LLTVAFQILV
Sbjct: 567 YAPLDVASMRAVMTGGDSSFVALLPSGFAIVPD-------GSSNKGS-GSLLTVAFQILV 618

Query: 379 DSVPTAKLSLGSVATVNNLIKCTVERIKAAV 409
           +S+P AKL++ SV TVN+L+ CT+ +IK+A+
Sbjct: 619 NSLPMAKLNVESVETVNSLLSCTINKIKSAI 649


>GSVIVT01017073001 assembled CDS
          Length = 750

 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/217 (44%), Positives = 150/217 (69%), Gaps = 8/217 (3%)

Query: 202 HAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVFEFLSDENHRSE 261
           ++WT +S+   DD+RV +RK+++DPG P G++L A +S W+PV P  +F+FL DE  RSE
Sbjct: 536 NSWTKVSSKTGDDIRVASRKNLNDPGEPQGVILCAVSSVWLPVAPHVIFDFLRDEARRSE 595

Query: 262 WDILSNGGQVQEMAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAP 321
           WDI+ +GG VQ +A++A G+D GN V++  + S ++S   M ++Q++CT++  S V+YAP
Sbjct: 596 WDIMLSGGPVQSIANLAKGQDRGNAVTIQTMKSKDNS---MWVVQDTCTNAYESMVVYAP 652

Query: 322 VDIAAMNIVLSGGDPDYVALLPSGFAILPDGPEYNP-----GGSLDVGSGGALLTVAFQI 376
           VDI  M  V++G D   +A+LPSGF+ILPDG E  P             GG+LLT+AFQ+
Sbjct: 653 VDIPGMQSVMTGCDSSSIAILPSGFSILPDGVESRPLVITSRPEEKSTEGGSLLTIAFQV 712

Query: 377 LVDSVPTAKLSLGSVATVNNLIKCTVERIKAAVSSDN 413
           L ++ PTAKL++ SV +VN L+ CT++ IK ++  ++
Sbjct: 713 LTNTSPTAKLTMESVESVNTLVSCTLQNIKTSLQCED 749


>GSVIVT01013073001 assembled CDS
          Length = 798

 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/235 (45%), Positives = 153/235 (65%), Gaps = 16/235 (6%)

Query: 192 TFQQEISVTA-HAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVF 250
           TF   IS ++  +WT LS +  D VR+ TRK + +PG+P G++LSA ++ W+P P   VF
Sbjct: 543 TFSVNISTSSGQSWTALSDSSDDTVRITTRK-ITEPGQPNGVILSAVSTTWLPHPHYHVF 601

Query: 251 EFLSDENHRSEWDILSNGGQVQEMAHIANGRDPGNYVSLLRVN-SANSSQSNMLILQESC 309
           + L DE  R++ D+LSNG  + E+AHIANG  PGN +SLLR+N ++NSSQ+  L+LQESC
Sbjct: 602 DLLRDERRRAQLDVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESC 661

Query: 310 TDSTGSYVIYAPVDIAAMNIVLSGGDPDYVALLPSGFAILPDGPEYN------------- 356
           TD +GS+V+Y  +D+ A+ + +SG DP  + LLP GFAI+P  P  +             
Sbjct: 662 TDQSGSHVVYTTIDVDAIQLAMSGEDPSCIPLLPMGFAIVPVVPNNDCNIMTTTDDNPMP 721

Query: 357 PGGSLDVGSGGALLTVAFQILVDSVPTAKLSLGSVATVNNLIKCTVERIKAAVSS 411
           P G  +  + G LLTV  Q+L  ++PTAKL+L SV  +NN +  TV +I AA+SS
Sbjct: 722 PSGDGNGHNSGCLLTVGLQVLASTIPTAKLNLSSVTAINNHLCNTVHQINAALSS 776


>GSVIVT01029396001 assembled CDS
          Length = 674

 Score =  188 bits (477), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 99/177 (55%), Positives = 119/177 (67%), Gaps = 11/177 (6%)

Query: 192 TFQQEISVT-AHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVF 250
            F   IS +  H WTTLS      VRV   K+ D PG+P G+VLSAAT+ W+PV P+ VF
Sbjct: 487 NFCASISTSNGHRWTTLSGLNEVGVRVTIHKNTD-PGQPNGVVLSAATTIWLPVSPQNVF 545

Query: 251 EFLSDENHRSEWDILSNGGQVQEMAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCT 310
            F  DE  R +WD+LSNG  VQE+AHIANG  PGN +S+LR  + N+SQ+NMLILQESC 
Sbjct: 546 NFFRDERTRPQWDVLSNGNAVQEVAHIANGPHPGNCISVLR--AFNTSQNNMLILQESCI 603

Query: 311 DSTGSYVIYAPVDIAAMNIVLSGGDPDYVALLPSGFAILPDGPEYNPGGSLDVGSGG 367
           DS+GS VIY PVD+ A+NI +SG DP Y+ LLPSGF I PD       G LD G G 
Sbjct: 604 DSSGSLVIYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPD-------GRLDQGDGA 653


>GSVIVT01035238001 assembled CDS
          Length = 714

 Score =  181 bits (458), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 96/213 (45%), Positives = 142/213 (66%), Gaps = 9/213 (4%)

Query: 204 WTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVFEFLSDENHRSEWD 263
           +  LS   +  VRV  RKS + PG+P G+++SAATS W+P+  + +F+F+ DE  R +WD
Sbjct: 500 FPQLSEVDTSGVRVSVRKSTE-PGQPGGLIVSAATSLWLPMQCQTIFDFIRDEKMRPQWD 558

Query: 264 ILSNGGQVQEMAHIANGRDPGNYVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVD 323
           +LS+G  V E+AHIANG +PGN  S++R      +++NML+LQESC +  G  V+YAP+D
Sbjct: 559 VLSSGNPVHEIAHIANGVNPGNCTSIIR--PFVPTENNMLMLQESCVEPLGGLVVYAPID 616

Query: 324 IAAMNIVLSGGDPDYVALLPSGFAILPDGPEYNPGGSLD----VGSGGALLTVAFQILV- 378
           I A+N+ + G +   + +LPSGF +  DG   +  G       +GSGG+LLTVAFQ+LV 
Sbjct: 617 IPAINVAIRGEESGNIPILPSGFIVSGDGRSDSGAGCTSDGNIMGSGGSLLTVAFQVLVC 676

Query: 379 -DSVPTAKLSLGSVATVNNLIKCTVERIKAAVS 410
             + P  +L++ SVATVN LI  TV++IK A++
Sbjct: 677 GPAAPQQQLNMESVATVNTLISSTVQKIKIALN 709


>GSVIVT01001986001 assembled CDS
          Length = 192

 Score =  170 bits (431), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 92/197 (46%), Positives = 126/197 (63%), Gaps = 8/197 (4%)

Query: 218 MTRKSMDDPGRPPGIVLSAATSFWIPVPPKKVFEFLSDENHRSEWDILSNGGQVQEMAHI 277
           M R   D+ GRPPG  +  ATS W+P  P++VF+FL D + R+ WDIL+ G  V+E  HI
Sbjct: 1   MIRSGEDEEGRPPGTAIVIATSVWVPASPRRVFDFLHDVHTRNRWDILTCGHVVKETGHI 60

Query: 278 ANGRDPGNYVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDIAAMNIVLSGGDPD 337
            NG D GN VS+L V S    Q  +++LQES T  T SYV +APV+   ++++L+GG PD
Sbjct: 61  DNGCDHGNRVSILEVKSPE-DQIVVILLQESYTTFTSSYVTFAPVEACTLDMILNGGSPD 119

Query: 338 YVALLPSGFAILPDGPEYNPGGSLDVGSGGALLTVAFQILVDSVPTAKLSLGSVATVNNL 397
           +V +LPSGF+ILPDGP  +       G  G+L+T+AFQIL +S     +   SVAT+  L
Sbjct: 120 HVPILPSGFSILPDGPTRD-------GGSGSLVTMAFQILDNSSSATYIPPESVATIFKL 172

Query: 398 IKCTVERIKAAVSSDNN 414
           +  T E IKAA+ S +N
Sbjct: 173 VTETAECIKAAMFSPSN 189


>GSVIVT01001987001 assembled CDS
          Length = 118

 Score = 78.2 bits (191), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 9/111 (8%)

Query: 304 ILQESCTDSTGSYVIYAPVDIAAMNIVLSGGDPDYVALLPSGFAILPDGPEYNPGGSLDV 363
           +LQES T S  SYV + PV+ ++ ++ L+GGDPD V ++PSGF+I PDGP          
Sbjct: 14  LLQESFTTSDSSYVTFTPVEASSFSMTLNGGDPDNVPVMPSGFSISPDGP---------T 64

Query: 364 GSGGALLTVAFQILVDSVPTAKLSLGSVATVNNLIKCTVERIKAAVSSDNN 414
           G  G+L+T+ FQIL  +         SV T+  LI  T + I A     +N
Sbjct: 65  GDEGSLVTIVFQILDGTASPMHFPSHSVGTMYKLITETAKSITAGTVDPDN 115