Jatropha Genome Database

JcCB0086571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0086571.10 - phase: 0 
         (386 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016222001 assembled CDS                                       545   e-155

>GSVIVT01016222001 assembled CDS
          Length = 644

 Score =  545 bits (1403), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 270/391 (69%), Positives = 297/391 (75%), Gaps = 14/391 (3%)

Query: 2   SSATRFRRLGVXXXXXXXXXXXGGFLSPTFATNDHGVRPALDPVKQKITDPNAVVPSRAA 61
           +++TR RRLG                 P  +++D G  P+LD V++KI D N VVPSRA 
Sbjct: 3   TTSTRLRRLGTVAAAVALSAGVT-LRDPPISSSDRG-GPSLDAVRRKIADSNGVVPSRAV 60

Query: 62  QESVLIGATTANPLDXXXXXXXXXXXXXXXXXXXRGLRVGLVERDDFSSG---------- 111
           QES LIG++  NPLD                   RGLRVGLVER+DFSSG          
Sbjct: 61  QESALIGSSAVNPLDILVVGGGATGCGVALDAATRGLRVGLVEREDFSSGTSSRSTKLLH 120

Query: 112 --VRYLEKAVFNLDYGQLRLVFHALEERKQVIDNAPHLCHALPCMTPCFDWFEVVYYWMG 169
             VRYLEKAVFNLDYGQL+LVFHALEERKQVI+NAPHLC ALPCMTPCFDWFEVVYYWMG
Sbjct: 121 GGVRYLEKAVFNLDYGQLKLVFHALEERKQVIENAPHLCQALPCMTPCFDWFEVVYYWMG 180

Query: 170 LKMYDLVAGPRLLHLSRYYSAQESLELFPTLAKKGKDKTLKGTVVYYDGQMNDSRXXXXX 229
           LK+YDLVAG RLLHLSRYYSAQES+ELFPTLA+ GKD++L+GTVVYYDGQMNDSR     
Sbjct: 181 LKLYDLVAGSRLLHLSRYYSAQESVELFPTLARNGKDRSLRGTVVYYDGQMNDSRLNVAL 240

Query: 230 XXXXXXXXXXXXXXXEVISFLKDEADERIIGARIRDNLSGKEFETYAKVVVNAAGPFCDS 289
                          EV+S L DE   +IIGARIRDNLSGKEF+TYAKVVVNAAGPFCDS
Sbjct: 241 ACTAALAGAAVLNHAEVVSLLMDEVSNQIIGARIRDNLSGKEFDTYAKVVVNAAGPFCDS 300

Query: 290 VRKMAKNDAQPMICPSSGVHIILPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTD 349
           VRKMA  ++QPMICPSSGVHI+LPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTD
Sbjct: 301 VRKMADKESQPMICPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTD 360

Query: 350 SNTIITPLPEPHEDEIQFILDAISDYLSVKV 380
           SNT IT LPEPHEDEIQFILDAISDYL+VKV
Sbjct: 361 SNTSITMLPEPHEDEIQFILDAISDYLNVKV 391