Jatropha Genome Database

JcCB0086551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0086551.10 - phase: 0 /partial
         (349 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035861001 assembled CDS                                       338   2e-93
GSVIVT01015558001 assembled CDS                                       256   1e-68

>GSVIVT01035861001 assembled CDS
          Length = 451

 Score =  338 bits (868), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/355 (53%), Positives = 221/355 (62%), Gaps = 9/355 (2%)

Query: 1   MPRPGPRPYECVRRAWHSDRHQPIRGSLIQEIFRVVNEVHSSATKKNKEWQEKLPVVVLR 60
           MPRPGPRPYECVRRAWHSDRHQPIRGSLIQEIFRVVNE+HSSATKKNKEWQEKLP+VVL+
Sbjct: 1   MPRPGPRPYECVRRAWHSDRHQPIRGSLIQEIFRVVNEIHSSATKKNKEWQEKLPIVVLK 60

Query: 61  AEEIMYSKANSEAEYMDLKTLWDRTNDAINTIIRRDESTETGELLQPCIEAALNLGCTPR 120
           AEEIMYSKANSEAEYMDLKTLWDR NDAINTIIRRDESTETGE LQPCIEA+LNLGC  R
Sbjct: 61  AEEIMYSKANSEAEYMDLKTLWDRANDAINTIIRRDESTETGEFLQPCIEASLNLGCPQR 120

Query: 121 RASRSQRNCNPRCYLXXXXXXXXXXXXGIVNDTIRANHTASPQCIPNYSNFIKSTIMNST 180
           RASRSQRN NPRCYL             I+ ++ + NHT   Q +  Y+ FIK + M+  
Sbjct: 121 RASRSQRNNNPRCYLTPSTQEPISISPSILENSPQGNHTTISQVMSRYATFIKPSSMSVI 180

Query: 181 QLGSELQNLICQNISIASNKFLFRTDNSRLSNYNQYFPMENRXXXXXXXXXXXXXGN--- 237
           Q G E  +    N    ++KFLF ++N   S  N+   ME               GN   
Sbjct: 181 QPGLEPHSTAFHNNDCPTSKFLFSSENCPPSG-NKCLQMEVYPASNVCAVYPLYDGNQLQ 239

Query: 238 CLDHQNGLGIL--PKTLPSILEPVKVGIEQNLLSCNEDAIAKIDQKDPIDKPIEQLEIGC 295
           C + Q G G+   PK+ P  +EP  +G  QNL S   D   K  Q D         +I C
Sbjct: 240 CEESQCGFGVQSHPKSNP--MEPAGMGTIQNLFSYAIDPTKKPSQTDFGHVTENSPKIDC 297

Query: 296 DXXXXXXXXXXXXXXMQNRHLQDVEDVGFGHSREGIK-SNKMPQMDKELSLFNRG 349
           D              ++N   Q+ EDVG   SREG K S+  PQ+DK+   F RG
Sbjct: 298 DLSLRLGPLSIPCVSVENSWPQEFEDVGSSCSREGSKFSDLSPQVDKQFPFFPRG 352


>GSVIVT01015558001 assembled CDS
          Length = 302

 Score =  256 bits (654), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 134/225 (59%), Positives = 156/225 (69%), Gaps = 21/225 (9%)

Query: 1   MPRPGPRPYECVRRAWHSDRHQPIRGSLIQEIFRVVNEVHSSATKKNKEWQEKLPVVVLR 60
           MPRPGPRPYECVRRAWHSDRHQP+RGS+IQ+IFRVV + HSSATKKN+EWQEKLP+VVL+
Sbjct: 1   MPRPGPRPYECVRRAWHSDRHQPMRGSIIQQIFRVVTDTHSSATKKNREWQEKLPIVVLK 60

Query: 61  AEEIMYSKANSEAEYMDLKTLWDRTNDAINTIIRRDESTETGELLQPCIEAALNLGCTPR 120
           AEEIMYSKANSE EYMDL TLWDR NDA+NTIIRRDESTETGELL PCIEAALNLGC P 
Sbjct: 61  AEEIMYSKANSETEYMDLGTLWDRVNDAVNTIIRRDESTETGELLPPCIEAALNLGCVPV 120

Query: 121 RASRSQRNCNPRCYLXXXXXXXXXXXXGIVNDTIRANHTASPQCIP----NYSNFIKSTI 176
           RASRSQR+ NPR YL             ++++ +       PQ  P    N   F +   
Sbjct: 121 RASRSQRHNNPRSYLTHRTQEPTSVSPRVLDNAVNER---CPQLQPPSAGNQLTFGRLN- 176

Query: 177 MNSTQLGSELQNLICQNISIASNKFLFRTDNSRLSNYNQYFPMEN 221
           M+ST L  +    + QN S+A+ +             N +FP EN
Sbjct: 177 MDSTHLVLDSDRHVTQNNSLATTR-------------NFHFPYEN 208