Jatropha Genome Database

JcCB0085591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0085591.10 - phase: 0 /partial
         (183 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037973001 assembled CDS                                       233   3e-62
GSVIVT01028365001 assembled CDS                                       224   1e-59
GSVIVT01015115001 assembled CDS                                       103   4e-23

>GSVIVT01037973001 assembled CDS
          Length = 215

 Score =  233 bits (594), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 122/148 (82%), Positives = 126/148 (85%), Gaps = 1/148 (0%)

Query: 29  EKKLVAEIKQTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 88
           EKKLVAEIK+TAKTGNEA+  ILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI
Sbjct: 39  EKKLVAEIKKTAKTGNEASL-ILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 97

Query: 89  STGMKGATKAMVAMNKQMAPTKQAKVIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXX 148
           STGMKGATKAMVAMNKQMAP KQ KVIKEFQKQSAQMDMTIEMMSESI            
Sbjct: 98  STGMKGATKAMVAMNKQMAPAKQVKVIKEFQKQSAQMDMTIEMMSESIDETLDKDEAEEE 157

Query: 149 XXXXXNQVLDEIGVGIASQLSSAPKGQL 176
                NQVLDEIGV IASQLSSAPKG++
Sbjct: 158 TEELTNQVLDEIGVDIASQLSSAPKGRI 185


>GSVIVT01028365001 assembled CDS
          Length = 212

 Score =  224 bits (572), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 110/151 (72%), Positives = 127/151 (84%)

Query: 29  EKKLVAEIKQTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 88
           EKKLVAEIK+TAKTGNEAATKILARQLVRLRQQI NLQGSRAQ+RG+ATHTQA++A+TS+
Sbjct: 39  EKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHANTSV 98

Query: 89  STGMKGATKAMVAMNKQMAPTKQAKVIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXX 148
           S GMKGA+KAM AMNKQMAP KQAKVI+EFQ+QSAQMDMT EMMS++I            
Sbjct: 99  SVGMKGASKAMAAMNKQMAPAKQAKVIQEFQRQSAQMDMTTEMMSDAIDDALDNDEAEEE 158

Query: 149 XXXXXNQVLDEIGVGIASQLSSAPKGQLQRR 179
                NQVLDEIGV +ASQLS+APKG++ R+
Sbjct: 159 TEDLTNQVLDEIGVDVASQLSAAPKGKIARK 189


>GSVIVT01015115001 assembled CDS
          Length = 226

 Score =  103 bits (257), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 86/140 (61%)

Query: 29  EKKLVAEIKQTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSI 88
           EKKL+ EIK++AK G   A K++A+ L+R R QI      ++Q++GVA   Q L ++ ++
Sbjct: 40  EKKLIVEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVALRIQTLKSTQAM 99

Query: 89  STGMKGATKAMVAMNKQMAPTKQAKVIKEFQKQSAQMDMTIEMMSESIXXXXXXXXXXXX 148
              MKG TKAM  MN+QM      K+++EF++Q+ +M+MT+E+M +++            
Sbjct: 100 GQAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMTMEVMGDAVDDALEGDEEEEE 159

Query: 149 XXXXXNQVLDEIGVGIASQL 168
                +QVLDEIG+ I S+L
Sbjct: 160 TEELVSQVLDEIGIDIKSEL 179