Jatropha Genome Database

JcCB0085561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0085561.10 + phase: 1 /pseudo/partial
         (315 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038078001 assembled CDS                                       496   e-141
GSVIVT01021520001 assembled CDS                                       487   e-138
GSVIVT01016712001 assembled CDS                                       340   8e-94
GSVIVT01016714001 assembled CDS                                       338   1e-93

>GSVIVT01038078001 assembled CDS
          Length = 371

 Score =  496 bits (1276), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/261 (93%), Positives = 250/261 (95%)

Query: 25  FRPRILIDVSKIDMTTSVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLS 84
           FRPRILIDVSKIDMTT+VLGFKISMPIMIAPTAMQKMAHPEGEY         GTIMTLS
Sbjct: 47  FRPRILIDVSKIDMTTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS 106

Query: 85  SWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 144
           SWATSSVEEVASTGPGIRFFQLYVYKDR+VVAQLVRRAERAGFKAIALTVDTPRLGRREA
Sbjct: 107 SWATSSVEEVASTGPGIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREA 166

Query: 145 DIKNRFTLPPFLTLKNFEGLNLGQMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITSLP 204
           DIKNRFTLPPFLTLKNFEGL+LG+MDKADDSGLASYVAGQIDRTLSWKDVKWLQTIT+LP
Sbjct: 167 DIKNRFTLPPFLTLKNFEGLDLGKMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITNLP 226

Query: 205 ILVKGVLTAEDARLAIQNGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDG 264
           ILVKGVLTAED RLAIQ GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDG
Sbjct: 227 ILVKGVLTAEDTRLAIQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDG 286

Query: 265 GVRRGTDVFKALALGASGIFV 285
           GVRRGTDVFKALALGASGIF+
Sbjct: 287 GVRRGTDVFKALALGASGIFI 307


>GSVIVT01021520001 assembled CDS
          Length = 372

 Score =  487 bits (1253), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/261 (91%), Positives = 247/261 (94%)

Query: 25  FRPRILIDVSKIDMTTSVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLS 84
           FRPRILIDVSKIDMTT+VLGFKISMPIMIAPTA QKMAHPEGEY         GTIMTLS
Sbjct: 50  FRPRILIDVSKIDMTTTVLGFKISMPIMIAPTAFQKMAHPEGEYATARAASAAGTIMTLS 109

Query: 85  SWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 144
           SWATSSVEEVASTGPGIRFFQLYVYKDR+VVAQLVRRAERAGFKAIALTVDTPRLGRREA
Sbjct: 110 SWATSSVEEVASTGPGIRFFQLYVYKDRHVVAQLVRRAERAGFKAIALTVDTPRLGRREA 169

Query: 145 DIKNRFTLPPFLTLKNFEGLNLGQMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITSLP 204
           DIKNRFTLPPFLTLKNFEGL+LG+MDKADDSGLASYVAGQIDR+LSWKDVKWLQTIT LP
Sbjct: 170 DIKNRFTLPPFLTLKNFEGLDLGKMDKADDSGLASYVAGQIDRSLSWKDVKWLQTITKLP 229

Query: 205 ILVKGVLTAEDARLAIQNGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDG 264
           ILVKGVLTAEDAR+A+  GAAGIIVSNHGARQLDYVPATIMALEEVVKA QGR+PVFLDG
Sbjct: 230 ILVKGVLTAEDARIAVNVGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 289

Query: 265 GVRRGTDVFKALALGASGIFV 285
           GVRRGTDVFKALALGASGIF+
Sbjct: 290 GVRRGTDVFKALALGASGIFI 310


>GSVIVT01016712001 assembled CDS
          Length = 364

 Score =  340 bits (871), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 167/261 (63%), Positives = 201/261 (77%), Gaps = 3/261 (1%)

Query: 25  FRPRILIDVSKIDMTTSVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLS 84
           F+PRIL+DVSKIDM+T++LG+KIS PIMIAPT++QK+AHPEGE           TIM LS
Sbjct: 49  FQPRILVDVSKIDMSTTILGYKISSPIMIAPTSLQKLAHPEGEIATARAAAACNTIMVLS 108

Query: 85  SWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 144
             AT +VEEVAS+   +RF QLYV+K R++ AQ+V++AER GFKAI LTVDTPRLGRREA
Sbjct: 109 FMATCTVEEVASSCNAVRFLQLYVFKRRDISAQVVQKAERYGFKAIVLTVDTPRLGRREA 168

Query: 145 DIKNRFTLPPFLTLKNFEGLNLGQMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITSLP 204
           DIKNR   P    LKNFEGL    +     S L +  +   D +LSWKD++WL++IT+LP
Sbjct: 169 DIKNRMVSP---QLKNFEGLLTTDVSNDKGSSLEALASEIYDASLSWKDIEWLRSITNLP 225

Query: 205 ILVKGVLTAEDARLAIQNGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDG 264
           IL+KGVLT EDA  A++ G +GIIVSNHGARQLDYVPATI ALEEVV+A  GRVPV LDG
Sbjct: 226 ILIKGVLTCEDAIKAVEVGVSGIIVSNHGARQLDYVPATISALEEVVRAVGGRVPVLLDG 285

Query: 265 GVRRGTDVFKALALGASGIFV 285
           G+RRGTDVFKALALGA  + V
Sbjct: 286 GIRRGTDVFKALALGAQAVLV 306


>GSVIVT01016714001 assembled CDS
          Length = 364

 Score =  338 bits (868), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 167/261 (63%), Positives = 198/261 (75%), Gaps = 3/261 (1%)

Query: 25  FRPRILIDVSKIDMTTSVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLS 84
           F PRIL+DVSKIDM+T+VLGF IS PIMIAPTAM K+AHPEGE           TIM LS
Sbjct: 49  FHPRILVDVSKIDMSTTVLGFNISSPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLS 108

Query: 85  SWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 144
             +T +VEEVAS+   +RF QLYV+K R+V AQLV+RAER GFKAI LT DTPRLGRREA
Sbjct: 109 FMSTCTVEEVASSCNAVRFLQLYVFKRRDVSAQLVQRAERNGFKAIVLTADTPRLGRREA 168

Query: 145 DIKNRFTLPPFLTLKNFEGLNLGQMDKADDSGLASYVAGQIDRTLSWKDVKWLQTITSLP 204
           DIKNR   P    LKNFEGL   ++     S + +  +G  D +LSWKD++WL++IT+LP
Sbjct: 169 DIKNRMVSP---RLKNFEGLISTEVVTDKGSNIEALASGMFDASLSWKDIEWLRSITNLP 225

Query: 205 ILVKGVLTAEDARLAIQNGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDG 264
           IL+KGVLT EDA  A++ G +GIIVSNHGARQLDYVPATI ALEEVV A  G+VPV  DG
Sbjct: 226 ILIKGVLTCEDAIKAVEVGVSGIIVSNHGARQLDYVPATISALEEVVLAVGGKVPVLFDG 285

Query: 265 GVRRGTDVFKALALGASGIFV 285
           G+RRGTD+FKALALGA  +F+
Sbjct: 286 GIRRGTDIFKALALGAQAVFI 306