Jatropha Genome Database

JcCB0085161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0085161.10 - phase: 0 /partial
         (96 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037590001 assembled CDS                                       148   6e-37
GSVIVT01034483001 assembled CDS                                        60   2e-10

>GSVIVT01037590001 assembled CDS
          Length = 246

 Score =  148 bits (373), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 67/80 (83%), Positives = 75/80 (93%)

Query: 8  IATATDDDLLLKSFFAEVSEVERDNEVLRILACFKLNPFEHLNLPFDSSPEDVKKQYRKL 67
            TA+++DLLLK+FFAEVSEVERDNEV+RILACFKLN FE+LN+PFDSSP+DVKKQYRKL
Sbjct: 2  TTTASEEDLLLKNFFAEVSEVERDNEVVRILACFKLNAFEYLNIPFDSSPDDVKKQYRKL 61

Query: 68 SLLVHPDKCKHPQAKEAFAG 87
          SLLVHPDKCKHPQAKEAF  
Sbjct: 62 SLLVHPDKCKHPQAKEAFGA 81


>GSVIVT01034483001 assembled CDS
          Length = 571

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 38/53 (71%)

Query: 33  EVLRILACFKLNPFEHLNLPFDSSPEDVKKQYRKLSLLVHPDKCKHPQAKEAF 85
           EV RI+     +P++ L +  + S ++VKK+Y KLSL+VHPDKC HPQA +AF
Sbjct: 283 EVTRIMGVETDSPYDVLGVNLNMSVDNVKKRYWKLSLMVHPDKCPHPQAHQAF 335