Jatropha Genome Database

JcCB0085061.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0085061.30 - phase: 1 /partial
         (161 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016714001 assembled CDS                                       165   1e-41
GSVIVT01016712001 assembled CDS                                       153   3e-38
GSVIVT01021520001 assembled CDS                                       120   2e-28
GSVIVT01038078001 assembled CDS                                       119   5e-28

>GSVIVT01016714001 assembled CDS
          Length = 364

 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/139 (58%), Positives = 102/139 (73%), Gaps = 2/139 (1%)

Query: 13  YPR-LVEFLHFDIQSTGQKSHCVSIRRIAPTAYHKFANPEGEVXXXXXXXXCNSIMILSY 71
           +PR LV+    D+ +T    +  S   IAPTA HK A+PEGE+        CN+IM+LS+
Sbjct: 50  HPRILVDVSKIDMSTTVLGFNISSPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSF 109

Query: 72  MSSCTVEEVASSCNAIRFYQLYVYKRRDISAHLVQRAERNGYKAIVLTVDAPRLGRREAD 131
           MS+CTVEEVASSCNA+RF QLYV+KRRD+SA LVQRAERNG+KAIVLT D PRLGRREAD
Sbjct: 110 MSTCTVEEVASSCNAVRFLQLYVFKRRDVSAQLVQRAERNGFKAIVLTADTPRLGRREAD 169

Query: 132 IKNK-AAPHNWDIQVLVSN 149
           IKN+  +P   + + L+S 
Sbjct: 170 IKNRMVSPRLKNFEGLIST 188


>GSVIVT01016712001 assembled CDS
          Length = 364

 Score =  153 bits (387), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 92/123 (74%), Gaps = 1/123 (0%)

Query: 14  PR-LVEFLHFDIQSTGQKSHCVSIRRIAPTAYHKFANPEGEVXXXXXXXXCNSIMILSYM 72
           PR LV+    D+ +T       S   IAPT+  K A+PEGE+        CN+IM+LS+M
Sbjct: 51  PRILVDVSKIDMSTTILGYKISSPIMIAPTSLQKLAHPEGEIATARAAAACNTIMVLSFM 110

Query: 73  SSCTVEEVASSCNAIRFYQLYVYKRRDISAHLVQRAERNGYKAIVLTVDAPRLGRREADI 132
           ++CTVEEVASSCNA+RF QLYV+KRRDISA +VQ+AER G+KAIVLTVD PRLGRREADI
Sbjct: 111 ATCTVEEVASSCNAVRFLQLYVFKRRDISAQVVQKAERYGFKAIVLTVDTPRLGRREADI 170

Query: 133 KNK 135
           KN+
Sbjct: 171 KNR 173


>GSVIVT01021520001 assembled CDS
          Length = 372

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 70/97 (72%)

Query: 39  IAPTAYHKFANPEGEVXXXXXXXXCNSIMILSYMSSCTVEEVASSCNAIRFYQLYVYKRR 98
           IAPTA+ K A+PEGE           +IM LS  ++ +VEEVAS+   IRF+QLYVYK R
Sbjct: 78  IAPTAFQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDR 137

Query: 99  DISAHLVQRAERNGYKAIVLTVDAPRLGRREADIKNK 135
            + A LV+RAER G+KAI LTVD PRLGRREADIKN+
Sbjct: 138 HVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR 174


>GSVIVT01038078001 assembled CDS
          Length = 371

 Score =  119 bits (299), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 69/97 (71%)

Query: 39  IAPTAYHKFANPEGEVXXXXXXXXCNSIMILSYMSSCTVEEVASSCNAIRFYQLYVYKRR 98
           IAPTA  K A+PEGE           +IM LS  ++ +VEEVAS+   IRF+QLYVYK R
Sbjct: 75  IAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDR 134

Query: 99  DISAHLVQRAERNGYKAIVLTVDAPRLGRREADIKNK 135
            + A LV+RAER G+KAI LTVD PRLGRREADIKN+
Sbjct: 135 HVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR 171