Jatropha Genome Database

JcCB0085061.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0085061.20 + phase: 1 /TE/pseudo/partial
         (252 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012382001 assembled CDS                                       124   4e-29
GSVIVT01028343001 assembled CDS                                       120   5e-28
GSVIVT01015960001 assembled CDS                                        80   8e-16
GSVIVT01000641001 assembled CDS                                        65   4e-11

>GSVIVT01012382001 assembled CDS
          Length = 952

 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 73/86 (84%)

Query: 167 RSSAKSKYRAMAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKH 226
           RSSA+++YRAMA ++CE++W++ LL ++GF    P KL+CDNQAA+HIA+NPV HERTKH
Sbjct: 836 RSSAEAEYRAMAAASCEMVWLKNLLTDLGFSPTSPMKLFCDNQAAMHIAANPVFHERTKH 895

Query: 227 IKIDCHFIREKIQQGVISTGHVKTSD 252
           I++DCHFIR+++Q  VI T ++++SD
Sbjct: 896 IEVDCHFIRQQVQSKVIQTHYIRSSD 921


>GSVIVT01028343001 assembled CDS
          Length = 2295

 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 67/86 (77%)

Query: 167  RSSAKSKYRAMAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKH 226
            RSSA+++YRAMA + CELIW+R LL E+ F      KL CDNQAALHIASNPV HERTKH
Sbjct: 1494 RSSAEAEYRAMALATCELIWLRHLLQELRFGKDEQMKLICDNQAALHIASNPVFHERTKH 1553

Query: 227  IKIDCHFIREKIQQGVISTGHVKTSD 252
            I++DCHFIREKI  G ++T  V ++D
Sbjct: 1554 IEVDCHFIREKIASGCVATSFVNSND 1579


>GSVIVT01015960001 assembled CDS
          Length = 1205

 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 49/68 (72%)

Query: 185 IWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKHIKIDCHFIREKIQQGVIS 244
           +WIR+LL+E+      P KL+CDN+A + +A NPV H+RTKH+++D HFI+EKI  G++ 
Sbjct: 1   MWIRRLLEELKMTGSSPMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGLVC 60

Query: 245 TGHVKTSD 252
             ++ T +
Sbjct: 61  MTYIPTEE 68


>GSVIVT01000641001 assembled CDS
          Length = 947

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 52/85 (61%)

Query: 168 SSAKSKYRAMAQSACELIWIRQLLDEIGFKSFLPAKLWCDNQAALHIASNPVCHERTKHI 227
           S+ ++++ A    AC+ IW+R++L+E+  K      ++CDN + + ++ NPV H R+KHI
Sbjct: 343 STTEAEFVAATVCACQAIWLRKILEELHLKQVGATTIFCDNSSTIKLSKNPVLHGRSKHI 402

Query: 228 KIDCHFIREKIQQGVISTGHVKTSD 252
            +  +F+R+    GVI   + ++ +
Sbjct: 403 DVKYYFLRDLSNDGVIDLVYCRSEN 427