Jatropha Genome Database

JcCB0085061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0085061.10 - phase: 0 /partial
         (183 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016712001 assembled CDS                                       282   5e-77
GSVIVT01016714001 assembled CDS                                       278   1e-75
GSVIVT01038078001 assembled CDS                                       216   5e-57
GSVIVT01021520001 assembled CDS                                       213   3e-56

>GSVIVT01016712001 assembled CDS
          Length = 364

 Score =  282 bits (722), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 138/183 (75%), Positives = 158/183 (86%), Gaps = 11/183 (6%)

Query: 1   DKGSKLELFAKETFDASLSWKDIDWLRSITNLPILIKGVLTREDERINYDVSLLAAIKAV 60
           DKGS LE  A E +DASLSWKDI+WLRSITNLPILIKGVLT ED           AIKAV
Sbjct: 193 DKGSSLEALASEIYDASLSWKDIEWLRSITNLPILIKGVLTCED-----------AIKAV 241

Query: 61  EVGVSGIVVSNHGGRQLNYSPATITVLEEVVRAVGGKIPVLFDGGVRRGTDVFKALALGA 120
           EVGVSGI+VSNHG RQL+Y PATI+ LEEVVRAVGG++PVL DGG+RRGTDVFKALALGA
Sbjct: 242 EVGVSGIIVSNHGARQLDYVPATISALEEVVRAVGGRVPVLLDGGIRRGTDVFKALALGA 301

Query: 121 QAVLIGRPVVFGLAAKGEYGVRRIVEMLKDELELTMALCGCPTLKDITRSHVRTEREGLR 180
           QAVL+GRPV++GLAAKGE+GVRR++EMLKDELE+TMAL GC ++KDI+R HVRTER+ L+
Sbjct: 302 QAVLVGRPVIYGLAAKGEHGVRRVLEMLKDELEITMALSGCSSVKDISRRHVRTERDRLQ 361

Query: 181 SML 183
           SML
Sbjct: 362 SML 364


>GSVIVT01016714001 assembled CDS
          Length = 364

 Score =  278 bits (710), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 136/183 (74%), Positives = 156/183 (85%), Gaps = 11/183 (6%)

Query: 1   DKGSKLELFAKETFDASLSWKDIDWLRSITNLPILIKGVLTREDERINYDVSLLAAIKAV 60
           DKGS +E  A   FDASLSWKDI+WLRSITNLPILIKGVLT ED           AIKAV
Sbjct: 193 DKGSNIEALASGMFDASLSWKDIEWLRSITNLPILIKGVLTCED-----------AIKAV 241

Query: 61  EVGVSGIVVSNHGGRQLNYSPATITVLEEVVRAVGGKIPVLFDGGVRRGTDVFKALALGA 120
           EVGVSGI+VSNHG RQL+Y PATI+ LEEVV AVGGK+PVLFDGG+RRGTD+FKALALGA
Sbjct: 242 EVGVSGIIVSNHGARQLDYVPATISALEEVVLAVGGKVPVLFDGGIRRGTDIFKALALGA 301

Query: 121 QAVLIGRPVVFGLAAKGEYGVRRIVEMLKDELELTMALCGCPTLKDITRSHVRTEREGLR 180
           QAV IGRPV++GLAAKG++GVRR++EMLKDELE+TMAL GC ++KDI+R HVRTER+ L+
Sbjct: 302 QAVFIGRPVIYGLAAKGKHGVRRVIEMLKDELEITMALSGCSSVKDISRRHVRTERDRLQ 361

Query: 181 SML 183
           SML
Sbjct: 362 SML 364


>GSVIVT01038078001 assembled CDS
          Length = 371

 Score =  216 bits (550), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 104/174 (59%), Positives = 130/174 (74%), Gaps = 11/174 (6%)

Query: 4   SKLELFAKETFDASLSWKDIDWLRSITNLPILIKGVLTREDERINYDVSLLAAIKAVEVG 63
           S L  +     D +LSWKD+ WL++ITNLPIL+KGVLT ED R+           A++ G
Sbjct: 197 SGLASYVAGQIDRTLSWKDVKWLQTITNLPILVKGVLTAEDTRL-----------AIQAG 245

Query: 64  VSGIVVSNHGGRQLNYSPATITVLEEVVRAVGGKIPVLFDGGVRRGTDVFKALALGAQAV 123
            +GI+VSNHG RQL+Y PATI  LEEVV+A  G++PV  DGGVRRGTDVFKALALGA  +
Sbjct: 246 AAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGI 305

Query: 124 LIGRPVVFGLAAKGEYGVRRIVEMLKDELELTMALCGCPTLKDITRSHVRTERE 177
            IGRPVVF LAA+GE GVR++++ML++E ELTMAL GC +LK+ITR H+ TE E
Sbjct: 306 FIGRPVVFSLAAEGEAGVRKVLQMLREEFELTMALSGCRSLKEITRDHIVTEWE 359


>GSVIVT01021520001 assembled CDS
          Length = 372

 Score =  213 bits (543), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 105/172 (61%), Positives = 127/172 (73%), Gaps = 11/172 (6%)

Query: 4   SKLELFAKETFDASLSWKDIDWLRSITNLPILIKGVLTREDERINYDVSLLAAIKAVEVG 63
           S L  +     D SLSWKD+ WL++IT LPIL+KGVLT ED RI           AV VG
Sbjct: 200 SGLASYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI-----------AVNVG 248

Query: 64  VSGIVVSNHGGRQLNYSPATITVLEEVVRAVGGKIPVLFDGGVRRGTDVFKALALGAQAV 123
            +GI+VSNHG RQL+Y PATI  LEEVV+A  G+IPV  DGGVRRGTDVFKALALGA  +
Sbjct: 249 AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 308

Query: 124 LIGRPVVFGLAAKGEYGVRRIVEMLKDELELTMALCGCPTLKDITRSHVRTE 175
            IGRPVV+ LAA GE GVR+ ++ML+DE ELTMAL GC +LK+I+R+H+ T+
Sbjct: 309 FIGRPVVYSLAADGEAGVRKALQMLRDEFELTMALSGCRSLKEISRNHIMTD 360