Jatropha Genome Database

JcCB0084971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0084971.10 + phase: 0 /pseudo/partial
         (185 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019635001 assembled CDS                                       275   1e-74
GSVIVT01028893001 assembled CDS                                        80   7e-16

>GSVIVT01019635001 assembled CDS
          Length = 693

 Score =  275 bits (702), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/150 (87%), Positives = 137/150 (91%)

Query: 35  GYNRVEEIIWVKTNQLQRIIRTGRTGH*LNHSKEHCLVGILGNPEVNRNIDTDLIVAEVR 94
           GY RVEEIIWVKTNQLQRIIRTGRTGH LNHSKEHCLVGI GNPEVNRNIDTD+IVAEVR
Sbjct: 507 GYKRVEEIIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGNPEVNRNIDTDVIVAEVR 566

Query: 95  ETSR*PDEMYPVLERISPRTRTLELFARMHNTHAGWMSLGNQLGGVRLVDEGLRARFKAA 154
           ETSR PDEMYP+LERISPRTR LELFARMHNTHAGWMSLGNQL GVRLVDEGLRARFKAA
Sbjct: 567 ETSRKPDEMYPMLERISPRTRKLELFARMHNTHAGWMSLGNQLNGVRLVDEGLRARFKAA 626

Query: 155 YPDVVVQSPSPPWASAMEIDSTASQMRSPF 184
           YP+V VQ  SPP  SAME+DS  +Q+RSPF
Sbjct: 627 YPEVEVQPTSPPRTSAMELDSNTAQIRSPF 656


>GSVIVT01028893001 assembled CDS
          Length = 990

 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 12/114 (10%)

Query: 35  GYNRVEEIIWVKTNQLQRIIRTGRTGH*L-NHSKEHCLVGILGNPE-------VNRNIDT 86
           G+ R E+I WVKTN+           H L  HSKEHCL+GI G          ++ NIDT
Sbjct: 688 GFRRCEDICWVKTNKTNATPGLRHDSHTLFQHSKEHCLMGIKGTVRRSTDGHIIHANIDT 747

Query: 87  DLIVAE---VRETSR*PDEMYPVLERISPRTRTLELFARMHNTHAGWMSLGNQL 137
           D+I+AE      T++ P++MY ++E  S   R LELF   HN  +GW+++GN L
Sbjct: 748 DVIIAEEPPYGSTAK-PEDMYRIIEHFSLGRRRLELFGEDHNIRSGWLTVGNGL 800