Jatropha Genome Database

JcCB0084921.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0084921.20 - phase: 0 
         (263 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012026001 assembled CDS                                       257   5e-69
GSVIVT01012025001 assembled CDS                                       251   2e-67

>GSVIVT01012026001 assembled CDS
          Length = 391

 Score =  257 bits (656), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 137/270 (50%), Positives = 178/270 (65%), Gaps = 20/270 (7%)

Query: 1   MYVTRPLSLYRKFPSALSEEPPEGPYSGYLVITDEETEAENTF-CFGFCKKTRVGKLPFP 59
           MYVTRPLSLYRK P ALS  PPEGP SGYL++ DEE+E   TF CFG CK++ +  LPFP
Sbjct: 1   MYVTRPLSLYRKSPEALSLPPPEGPNSGYLILQDEESE---TFCCFGLCKESDIWDLPFP 57

Query: 60  QDKILNVVHLS---ENQETTAKKFWFVPVLGQLLSSNCYYVIKAKGRHKGQACRCSRDMD 116
           Q+K L V + +   E+  T+  + +F+PVL Q LS N YY IK  GRHKG A   SR+ D
Sbjct: 58  QNKNLTVRYSTGSGESSNTSHDEVFFIPVLNQPLSLNRYYAIKRHGRHKGVAHASSREDD 117

Query: 117 MGLLCCFKKVIKDIRPRPLDPRNTYQEFKIS-----SHYNHSFFAKSLAPYAYPPKLLRN 171
           MG  CCF  V+KD++PRPLDP++ YQ+F+IS          SF AKS+AP  +PP  LR 
Sbjct: 118 MG-TCCFCNVVKDVKPRPLDPQDIYQQFEISLVEGACTSKGSFTAKSIAPDGFPPNFLRR 176

Query: 172 KGWELRISLRSSRKLQPLINHHALGLDSSARTQLPNFDFPISSQTSSSVTIGTWYCPFMF 231
           +GW L  S   + +L       A GLD S R +LP+F+FP+ S++S  V +G WYCPFMF
Sbjct: 177 EGWNLSTSTPRNFELG-----EAAGLDPSLRARLPDFNFPLHSKSSEPVVVGKWYCPFMF 231

Query: 232 IKEENARIREQMNRSILYRMSLEQYWEEIL 261
           +KE    +++Q  RS+ Y M+LEQ WE+I 
Sbjct: 232 VKE--GELKDQAKRSVYYEMTLEQKWEQIF 259


>GSVIVT01012025001 assembled CDS
          Length = 395

 Score =  251 bits (641), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 135/273 (49%), Positives = 174/273 (63%), Gaps = 22/273 (8%)

Query: 1   MYVTRPLSLYRKFPSALSEEPPEGPYSGYLVITDEETEAENTFCFGFCKKTRVGKLPFPQ 60
           MYVTRPLSLYRK P ALS  PPEGP SGYLV+ DEE+E   T CFG CK+  +  LPFPQ
Sbjct: 1   MYVTRPLSLYRKSPDALSLPPPEGPNSGYLVLQDEESET--TSCFGLCKERDIRDLPFPQ 58

Query: 61  DKILNVVH-------LSENQETTAKKFWFVPVLGQLLSSNCYYVIKAKGRHKGQACRCSR 113
           DK L V +       +S  + T   + +F+PVL Q LS N YY IK  GRHKG+A   SR
Sbjct: 59  DKNLTVRYSTVVAGDISLRRHTNFYEVFFIPVLNQPLSLNRYYAIKPHGRHKGEAYASSR 118

Query: 114 DMDMGLLCCFKKVIKDIRPRPLDPRNTYQEFKIS-----SHYNHSFFAKSLAPYAYPPKL 168
             DMG  CCF  V+ D++PRPLDP++ Y +F++S          SF AKS+AP   PP  
Sbjct: 119 AEDMG-TCCFCDVVDDVKPRPLDPQDIYHQFEVSLVEGTCTPKGSFIAKSIAPDGLPPYF 177

Query: 169 LRNKGWELRISLRSSRKLQPLINHHALGLDSSARTQLPNFDFPISSQTSSSVTIGTWYCP 228
           LR +GW+L  S   + KL       A GLD S R +LP+F+FP+ S++S  V +G WYCP
Sbjct: 178 LRRRGWKLSTSTPPNFKL-----GEAAGLDPSLRARLPDFNFPLHSKSSEPVVVGKWYCP 232

Query: 229 FMFIKEENARIREQMNRSILYRMSLEQYWEEIL 261
           FMF+KE    +++++ RS+ Y M+LEQ WE+I 
Sbjct: 233 FMFVKE--GELKDRVRRSVYYEMTLEQKWEQIF 263