Jatropha Genome Database

JcCB0084921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0084921.10 - phase: 1 /pseudo
         (389 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036477001 assembled CDS                                       576   e-165
GSVIVT01001997001 assembled CDS                                        95   6e-20
GSVIVT01012644001 assembled CDS                                        87   1e-17

>GSVIVT01036477001 assembled CDS
          Length = 495

 Score =  576 bits (1484), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 278/352 (78%), Positives = 313/352 (88%), Gaps = 1/352 (0%)

Query: 13  KKMCLRLSNGFRARVKAISN-ANLKAIEIPEKWYNLIADXXXXXXXXXXXXTFEPVKPED 71
           K M LR S   R R +A S+ A  +A+EIP +WYNLIAD            T EP+KPED
Sbjct: 27  KPMLLRASPRCRVRARAASSKAGPQAVEIPHQWYNLIADLPVKPPPALHPQTQEPIKPED 86

Query: 72  LAPLFPDELIKQEATNEKFIDIPEQVLDIYKLWRPTPLIRAKRLEKLLDTPAKIYYKYEG 131
           L+PLFPDELIKQEA+ ++FI IPE+V+D+Y+LWRPTPLIRAKRLEKLLDTPA+IYYKYEG
Sbjct: 87  LSPLFPDELIKQEASTDRFIAIPEEVIDVYRLWRPTPLIRAKRLEKLLDTPARIYYKYEG 146

Query: 132 VSPAGSHKPNTAVPQVFYNAQQGIKNLVTETGAGQWGCSLAFACSLFGLGCEVWQVRASY 191
           VSPAGSHKPNTAVPQV+YNAQ+G+K++ TETGAGQWG SLAFACSLFGL CEVWQVRASY
Sbjct: 147 VSPAGSHKPNTAVPQVWYNAQEGVKSVTTETGAGQWGSSLAFACSLFGLDCEVWQVRASY 206

Query: 192 DQKPYRRMMMETWGAKVHPSPSNVTNAGRDILKKDPSTPGSLGIAISEAVEVAATNADTK 251
           DQKPYR +MM+TWGAKVHPSPS++T AGR IL+ +PS+PGSLGIAISEAVEVAA NADTK
Sbjct: 207 DQKPYRNLMMQTWGAKVHPSPSSITEAGRKILQMNPSSPGSLGIAISEAVEVAAANADTK 266

Query: 252 YCLGSVLNHVLLHQTIMGEECLKQMEAIGETPDMIIGCTGGGSNFAGLSFPFIREKLNGK 311
           YCLGSVLNHVLLHQT++GEEC+KQMEAIGETPD+IIGCTGGGSNF GL+FPFIREKL G+
Sbjct: 267 YCLGSVLNHVLLHQTVIGEECIKQMEAIGETPDVIIGCTGGGSNFGGLTFPFIREKLKGR 326

Query: 312 INPVIRAVEPAACPSLTKGVYAYDYGDTAGMTPLMKMHTLGHDFIPDPIHAG 363
           INP+IRAVEP ACPSLTKGVYAYDYGDTAGMTPLMKMHTLGHDF+PDPIHAG
Sbjct: 327 INPLIRAVEPTACPSLTKGVYAYDYGDTAGMTPLMKMHTLGHDFVPDPIHAG 378


>GSVIVT01001997001 assembled CDS
          Length = 407

 Score = 95.1 bits (235), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 122/284 (42%), Gaps = 44/284 (15%)

Query: 103 LWRPTPLIRAKRLEKLLDTPAK----IYYKYEGVSPAGSHKPNTAVPQVFYNAQQGIKNL 158
           + R +PL  A+RL +           IY K E ++  G+HK N AV Q     + G   +
Sbjct: 62  VGRESPLYFAERLTEHYKRHNGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKTRI 121

Query: 159 VTETGAGQWGCSLAFACSLFGLGCEVWQVRASYDQKPYRRMMMETWGAKVHPSPSNVTNA 218
           + ETGAGQ G + A  C+ FGL C V+      +++      M   GA+V        +A
Sbjct: 122 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV-----RAVHA 176

Query: 219 GRDILKKDPSTPGSLGIAISEAVEVAATNAD-TKYCLGSVLN------HVLLHQTIMGEE 271
           G   LK           A SEA+    TN + T Y LGSV         V     ++G+E
Sbjct: 177 GTATLKD----------ATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKE 226

Query: 272 CLKQ-MEAIGETPDMIIGCTGGGSNFAGLSFPFIREKLNGKINPVIRAVEPAA------- 323
             KQ ME  G  PD+++ C GGGSN  GL + F+ ++     +  +  VE A        
Sbjct: 227 TRKQAMEKWGGKPDVLVACVGGGSNAMGLFYEFVDDE-----DVRLIGVEAAGFGLDSGK 281

Query: 324 -CPSLTKGVYAYDYGDTAGMTPLMKMHTLGHDFIPDPIHAGISY 366
              +LT+G    + G   G    +     G    P  I AG+ Y
Sbjct: 282 HAATLTRG----EVGVLHGAMSYLLQDDDGQIIEPHSISAGLDY 321


>GSVIVT01012644001 assembled CDS
          Length = 407

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 30/217 (13%)

Query: 103 LWRPTPLIRAKRLEKLLDTPA----KIYYKYEGVSPAGSHKPNTAVPQVFYNAQQGIKNL 158
           + R TPL  A+RL       +    +IY K E ++  G+HK N A+ Q     + G  ++
Sbjct: 52  VGRETPLYFAQRLTDHYKNESGCGPEIYLKREDLNHGGAHKINNAIAQAMIAKRMGRTSI 111

Query: 159 VTETGAGQWGCSLAFACSLFGLGCEVWQVRASYDQKPYRRMMMETWGAKVHPSPSNVTNA 218
           V  TGAGQ G + A AC+   L C +       +++    ++M+  GA+V     N  N 
Sbjct: 112 VAATGAGQHGVATAAACAKLSLKCTIVMGTLDMERQASNVLLMKLLGAEVKSVDGNFKN- 170

Query: 219 GRDILKKDPSTPGSLGIAISEAVEVAATNADTKYCL-GSVL------NHVLLHQTIMGEE 271
                            A SEA+     N +T Y L G+ +      + V   Q+I+G+E
Sbjct: 171 -----------------ATSEAIREWVGNLETNYFLIGTAVGPHPCPSMVREFQSIIGKE 213

Query: 272 CLKQ-MEAIGETPDMIIGCTGGGSNFAGLSFPFIREK 307
             +Q ME  G  PD+++ C G GSN  GL   FI ++
Sbjct: 214 TRRQAMERWGRKPDVLVACVGSGSNALGLFHEFIADE 250