Jatropha Genome Database

JcCB0084431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0084431.10 + phase: 0 /partial
         (379 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010301001 assembled CDS                                        82   6e-16
GSVIVT01003969001 assembled CDS                                        73   2e-13
GSVIVT01011757001 assembled CDS                                        70   2e-12
GSVIVT01020143001 assembled CDS                                        68   7e-12
GSVIVT01036387001 assembled CDS                                        66   3e-11

>GSVIVT01010301001 assembled CDS
          Length = 621

 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 37/39 (94%)

Query: 1  MSETLAWEKWSTFSHNRYLEEVEQFSKPGSVAQKKAYFE 39
          MSE+LAWEKWS+FS NRYLEE E+FSKPGSVAQKKAYFE
Sbjct: 1  MSESLAWEKWSSFSQNRYLEEAEKFSKPGSVAQKKAYFE 39


>GSVIVT01003969001 assembled CDS
          Length = 567

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 45/68 (66%)

Query: 1   MSETLAWEKWSTFSHNRYLEEVEQFSKPGSVAQKKAYFEXXXXXXXXXXXXXXXXXXNTA 60
           MSE+L+WEKWS+FS+NRY+EE E++++PGSVAQKKA+FE                  N A
Sbjct: 40  MSESLSWEKWSSFSNNRYVEEAERYARPGSVAQKKAFFEAHYKRIAAKKAAALLEQANAA 99

Query: 61  LSSVPEGD 68
            ++ PE +
Sbjct: 100 ENNAPEAE 107


>GSVIVT01011757001 assembled CDS
          Length = 593

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 36/38 (94%)

Query: 2  SETLAWEKWSTFSHNRYLEEVEQFSKPGSVAQKKAYFE 39
          +E+L+WE+ S+FSHNRYLEEVE++SKPGSV +KKAYFE
Sbjct: 30 TESLSWERRSSFSHNRYLEEVEKYSKPGSVTEKKAYFE 67


>GSVIVT01020143001 assembled CDS
          Length = 513

 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 33/36 (91%)

Query: 4  TLAWEKWSTFSHNRYLEEVEQFSKPGSVAQKKAYFE 39
          +L+WEKWS+FS N+YLEEVE+ S PGSVAQKKAYFE
Sbjct: 39 SLSWEKWSSFSPNKYLEEVEKCSTPGSVAQKKAYFE 74


>GSVIVT01036387001 assembled CDS
          Length = 604

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 31/38 (81%)

Query: 2  SETLAWEKWSTFSHNRYLEEVEQFSKPGSVAQKKAYFE 39
          +E LAWEKWS FSHNR  EE+E+F  PG VAQKKAYFE
Sbjct: 48 AEPLAWEKWSVFSHNRCQEELEKFKAPGLVAQKKAYFE 85