Jatropha Genome Database

JcCB0083891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083891.10 - phase: 0 
         (288 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034964001 assembled CDS                                       486   e-138

>GSVIVT01034964001 assembled CDS
          Length = 499

 Score =  486 bits (1252), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/288 (84%), Positives = 264/288 (91%)

Query: 1   MDQAISVMAQAGFAELIDFNPIRATDVKLPAGGTFVIAHSLAESQKAVTAATNYNNRVVE 60
           MDQAIS+MA++GFAELIDFNP+RATDV+LPAGG+FVIAHSLAESQKAVTAATNYNNRVVE
Sbjct: 212 MDQAISIMAKSGFAELIDFNPVRATDVQLPAGGSFVIAHSLAESQKAVTAATNYNNRVVE 271

Query: 61  CRLAAIVLGIKLGMKPQDAISKVKTLSDVEGLCVSFAGRHNSSDPVVAVKELLKEEPYTA 120
           CRLAAIVLGIKLGMKPQ AI++VKTLSDVEGLCVSFA  H SSDPVVAVKE LKEEPYTA
Sbjct: 272 CRLAAIVLGIKLGMKPQQAIAEVKTLSDVEGLCVSFASDHGSSDPVVAVKEFLKEEPYTA 331

Query: 121 EEIEKITEQDLPXXXXXXXXXLDVLKAATHFKLHQRAAHVYSEAKRVHAFKDTVSSNLSE 180
           EEIEKI E+ LP         LDVLKAA HFKL QRA+HVYSEA+RVHAF+DTV S LSE
Sbjct: 332 EEIEKIIEESLPSVFGNSPTSLDVLKAAKHFKLFQRASHVYSEARRVHAFRDTVLSGLSE 391

Query: 181 EDKLKKLGDLMNESHYSCSVLYECSCPELEELVKICREHGALGARLTGAGWGGCAVALVK 240
           ED LKKLGDLMN+SH SCSVLYECSCPELEELVKICR++GALGARLTGAGWGGCAVALVK
Sbjct: 392 EDMLKKLGDLMNKSHDSCSVLYECSCPELEELVKICRDNGALGARLTGAGWGGCAVALVK 451

Query: 241 EAIVPQFILNLKENFFQSRIDKGIIGKNDLGLYVFASKPSSGAAIFKF 288
           E+IVPQFILNLK+ F+QSRI+KG+I KNDLGLY+FASKPSSGAAIFKF
Sbjct: 452 ESIVPQFILNLKDQFYQSRIEKGVINKNDLGLYIFASKPSSGAAIFKF 499