Jatropha Genome Database

JcCB0083791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083791.10 + phase: 0 /pseudo/partial
         (341 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018377001 assembled CDS                                       437   e-123
GSVIVT01026824001 assembled CDS                                       286   7e-78
GSVIVT01016997001 assembled CDS                                       149   3e-36
GSVIVT01015311001 assembled CDS                                       144   5e-35
GSVIVT01035291001 assembled CDS                                       137   1e-32
GSVIVT01013039001 assembled CDS                                        49   3e-06

>GSVIVT01018377001 assembled CDS
          Length = 625

 Score =  437 bits (1125), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/255 (83%), Positives = 229/255 (89%)

Query: 84  GVLNAARKTMARMLGNNESAFESARSQFWVVDAQGLITEERPNIDPEALPFARKVKEASR 143
           GV+NAARKTMARMLGNNESAF+SA SQFWVVDA+GLITE R NIDP+ALPFARKVKE  R
Sbjct: 353 GVVNAARKTMARMLGNNESAFDSAGSQFWVVDAEGLITEARDNIDPDALPFARKVKEIDR 412

Query: 144 QGLREGASLVEVVREVKPDVLLGLSAVGGLFSKEVLEALKGSTSTRPAVFAMSNPTKNAE 203
           QGLREGASL EVV++VKPDVLLGLSAVGGLFSKEVLEALK STSTRPA+FAMSNPTKNAE
Sbjct: 413 QGLREGASLAEVVKQVKPDVLLGLSAVGGLFSKEVLEALKDSTSTRPAIFAMSNPTKNAE 472

Query: 204 CTPEEAFSILGDNIIFASGSPFKDVDLGNGHVGHCNQGNNMYLFPGIGLGTLLSGSRIIS 263
           CTPEEAFSI+GDN+IFASGSPFKDVDLGNGH+GHCNQGNNMYLFPGIGLGTLLSGSRIIS
Sbjct: 473 CTPEEAFSIVGDNVIFASGSPFKDVDLGNGHIGHCNQGNNMYLFPGIGLGTLLSGSRIIS 532

Query: 264 DGMLQAAAECLAAYMTEEEVLQGVIYPSTSRIRDITKQXXXXXXXXXXXXDLAEGYREMD 323
           DGMLQAAAECLAAYMTEEEVL+G+IYPS S IRDITK+            DLAEGYR +D
Sbjct: 533 DGMLQAAAECLAAYMTEEEVLKGMIYPSISSIRDITKEVAAAVVREAIEEDLAEGYRGID 592

Query: 324 ARELRKLNEVHILSF 338
           AREL KLN+  + +F
Sbjct: 593 ARELCKLNQEELATF 607


>GSVIVT01026824001 assembled CDS
          Length = 605

 Score =  286 bits (733), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 143/255 (56%), Positives = 186/255 (72%), Gaps = 5/255 (1%)

Query: 84  GVLNAARKTMARMLGNNESAFESARSQFWVVDAQGLITEERPNIDPEALPFARKVKEASR 143
           GVLN A +  +R+ GN  +   S   QF+++D  GLIT+ER NIDP A PFA+   E   
Sbjct: 339 GVLNMAAQAASRIAGNTGA---SPNHQFYLLDKDGLITKERKNIDPAAAPFAKGPGEI-- 393

Query: 144 QGLREGASLVEVVREVKPDVLLGLSAVGGLFSKEVLEALKGSTSTRPAVFAMSNPTKNAE 203
           +GLREGASL+EVV++VKP VLLGLS VGG+F++EVL+A++ S ST+PA+FAMSNPT NAE
Sbjct: 394 EGLREGASLLEVVKKVKPHVLLGLSGVGGVFNEEVLKAMRESDSTKPAIFAMSNPTMNAE 453

Query: 204 CTPEEAFSILGDNIIFASGSPFKDVDLGNGHVGHCNQGNNMYLFPGIGLGTLLSGSRIIS 263
           CT  +AF   G+NI+FASGSPF +V+LGNG VGH NQ NNMYLFPGIGLGTLL+G+  IS
Sbjct: 454 CTAADAFKHAGENIVFASGSPFANVNLGNGKVGHVNQANNMYLFPGIGLGTLLAGAHFIS 513

Query: 264 DGMLQAAAECLAAYMTEEEVLQGVIYPSTSRIRDITKQXXXXXXXXXXXXDLAEGYREMD 323
           DGMLQAAAECLA+YM++EE   G++YPS   IR IT +            +LAEG+ ++ 
Sbjct: 514 DGMLQAAAECLASYMSDEETQNGILYPSIDSIRHITAEVGAAVLRAAVAEELAEGHGDVG 573

Query: 324 ARELRKLNEVHILSF 338
            REL  +++   + +
Sbjct: 574 PRELEHMSKEETVEY 588


>GSVIVT01016997001 assembled CDS
          Length = 640

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 122/204 (59%), Gaps = 9/204 (4%)

Query: 96  MLGNNESAFESARSQFWVVDAQGLITEERPNIDPEALPFARKVKEASRQGLREGASLVEV 155
           M    ++  E  R + W+VD++GLI   R     ++L   +K      + ++   +LV+ 
Sbjct: 403 MSKQTQAPLEETRKKIWLVDSKGLIVSSRM----DSLQHFKKPWAHEHEPIK---NLVDA 455

Query: 156 VREVKPDVLLGLSAVGGLFSKEVLEALKGSTSTRPAVFAMSNPTKNAECTPEEAFSILGD 215
           V+ +KP VL+G S VG  F+KEV+EA+  S + +P + A+SNPT  +ECT EEA++    
Sbjct: 456 VKAIKPTVLIGSSGVGRTFTKEVVEAM-ASFNEKPIILALSNPTSQSECTAEEAYTWSEG 514

Query: 216 NIIFASGSPFKDVDLGNGHVGHCNQGNNMYLFPGIGLGTLLSGSRIISDGMLQAAAECLA 275
             IFASGSPF  V+  NG V    Q NN Y+FPG GLG ++SG+  + D ML AA+E LA
Sbjct: 515 RAIFASGSPFDPVEY-NGKVFVPGQSNNAYIFPGFGLGLIISGAIRVHDDMLLAASEALA 573

Query: 276 AYMTEEEVLQGVIYPSTSRIRDIT 299
              T+E   +G+IYP  S IR I+
Sbjct: 574 KQATQENFDKGMIYPPFSNIRKIS 597


>GSVIVT01015311001 assembled CDS
          Length = 591

 Score =  144 bits (364), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 126/225 (56%), Gaps = 9/225 (4%)

Query: 75  KRLLLLVQEGVLNAARKTMARMLGNNESAFESARSQFWVVDAQGLITEERPNIDPEALPF 134
           K L L   E     A      M    +   E  R + W+VD++GLI   R +    +L  
Sbjct: 333 KFLFLGAGEAGTGIAELIALEMSKQTKCPIEETRKKIWLVDSKGLIVSSRKD----SLQQ 388

Query: 135 ARKVKEASRQGLREGASLVEVVREVKPDVLLGLSAVGGLFSKEVLEALKGSTSTRPAVFA 194
            +K      + +++   L+  V+ +KP VL+G S VG  F+KEV+EA+  S + +P + A
Sbjct: 389 FKKPWAHEHEPVKD---LLHAVKVIKPTVLIGSSGVGKAFTKEVIEAM-ASCNEKPLILA 444

Query: 195 MSNPTKNAECTPEEAFSILGDNIIFASGSPFKDVDLGNGHVGHCNQGNNMYLFPGIGLGT 254
           +SNPT  +ECT EEA++      IFASGSPF  V+  NG      Q NN Y+FPG+G+G 
Sbjct: 445 LSNPTSQSECTAEEAYTWTQGRAIFASGSPFDPVEY-NGKTFVPGQANNAYIFPGLGMGL 503

Query: 255 LLSGSRIISDGMLQAAAECLAAYMTEEEVLQGVIYPSTSRIRDIT 299
           ++SG+  + D ML AA+E LA  +T+E   +G+IYP  S IR I+
Sbjct: 504 VISGAIRVHDEMLLAASEALARQVTQENFDKGLIYPPFSNIRKIS 548


>GSVIVT01035291001 assembled CDS
          Length = 575

 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 122/201 (60%), Gaps = 9/201 (4%)

Query: 99  NNESAFESARSQFWVVDAQGLITEERPNIDPEALPFARKVKEASRQGLREGASLVEVVRE 158
             ++  E  R + W+VD++GLI   R     E+L   +K      + +R   +L++ V+ 
Sbjct: 341 QTKAPLEETRKKIWLVDSKGLIVHSRM----ESLQHFKKPWAHDHEPIR---ALLDAVKS 393

Query: 159 VKPDVLLGLSAVGGLFSKEVLEALKGSTSTRPAVFAMSNPTKNAECTPEEAFSILGDNII 218
           +KP VL+G S VG  F+KEV+EA+  S + +P + A+SNPT  +ECT EEA++      I
Sbjct: 394 IKPTVLIGSSGVGKTFTKEVVEAMT-SFNKKPLILALSNPTSQSECTAEEAYTWSKGRAI 452

Query: 219 FASGSPFKDVDLGNGHVGHCNQGNNMYLFPGIGLGTLLSGSRIISDGMLQAAAECLAAYM 278
           FASGSPF  V+  NG +    Q NN Y+FPG GLG ++SG+  + D ML AA+E LAA +
Sbjct: 453 FASGSPFDPVEY-NGKLFVPGQANNAYIFPGFGLGLIMSGAIRVHDDMLLAASEALAAQV 511

Query: 279 TEEEVLQGVIYPSTSRIRDIT 299
           T+E   +G+IYP    IR I+
Sbjct: 512 TQENYDKGLIYPPFCNIRKIS 532


>GSVIVT01013039001 assembled CDS
          Length = 432

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 7/84 (8%)

Query: 99  NNESAFESARSQFWVVDAQGLITEERPNIDPEALPFARKVKEASRQGLREGASLVEVVRE 158
             ++  E  R + W+V+++GLI   R     E+L   +K      + +R   +LV+ V+ 
Sbjct: 339 QTKAPLEETRKKIWLVNSKGLIVHSRM----ESLQHFKKPWAHEHEPIR---ALVDAVQS 391

Query: 159 VKPDVLLGLSAVGGLFSKEVLEAL 182
           +KP VL+G   +G  F+KEV+EA+
Sbjct: 392 IKPTVLIGSLGIGKTFTKEVVEAM 415