Jatropha Genome Database

JcCB0083701.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083701.20 - phase: 2 /pseudo/partial
         (174 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031017001 assembled CDS                                       122   1e-28
GSVIVT01011870001 assembled CDS                                        79   9e-16

>GSVIVT01031017001 assembled CDS
          Length = 365

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 76/141 (53%), Gaps = 52/141 (36%)

Query: 83  AYLYGECIECMATSDNVVRAGLTPKHRDIQTLCSMLTYKQA------------------- 123
           AYLYGECIECMATSDNVVRAGLTPKHRD+QTLCSMLTYKQ                    
Sbjct: 225 AYLYGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILQGVPLNPYTRRYLP 284

Query: 124 ---------------------------------GEGRMYTQLSKDVVTEGDVLFAPANTE 150
                                            GEG  +    ++ V EGDVLFAPA+TE
Sbjct: 285 PFDEFEVDCCSLPKGASAMFPAVEGPSIFVVTVGEGTAHVGACEEQVGEGDVLFAPADTE 344

Query: 151 VTITTTSELCLYRAGVNSRFF 171
           ++  T+++L LYRAGVNSR F
Sbjct: 345 ISFGTSTQLNLYRAGVNSRLF 365


>GSVIVT01011870001 assembled CDS
          Length = 400

 Score = 79.3 bits (194), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 64/137 (46%), Gaps = 54/137 (39%)

Query: 83  AYLYGECIECMATSDNVVRAGLTPKHRDIQTLCSMLTYKQ-------------------- 122
           AY+ GEC ECMAT DNVVRAGLT KH+DI+ L SMLTY+Q                    
Sbjct: 257 AYIPGECTECMATLDNVVRAGLTSKHQDIRKLFSMLTYQQGFPEILVGVSMNPYTKRYLP 316

Query: 123 --------------------------------AGEGRMYTQLSKD-VVTEGDVLFAPANT 149
                                           AG+G ++   + + V+ EG VLF PAN 
Sbjct: 317 PFDEFEVDCCILPQAASVVFPSVPGPSPFLIMAGKGTIHAGFAGEHVIGEGSVLFVPANM 376

Query: 150 EVTITTTS-ELCLYRAG 165
           E+ I  +S EL LYRAG
Sbjct: 377 EIRIAASSMELQLYRAG 393