Jatropha Genome Database

JcCB0083701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083701.10 + phase: 2 /partial
         (181 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031018001 assembled CDS                                       308   9e-85
GSVIVT01008307001 assembled CDS                                       304   1e-83
GSVIVT01016480001 assembled CDS                                       281   1e-76

>GSVIVT01031018001 assembled CDS
          Length = 255

 Score =  308 bits (789), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 148/164 (90%), Positives = 160/164 (97%)

Query: 18  FDLENTNPELKSDLKDLFINQAVQMDVSGNRKAVVIYVPYRLRKAYRKIHLRLVRELEKK 77
           FDLENT PELKSDLKDLFIN A Q+D+SGNRKA+V++VPYRLRK YRKIHL+LVRELEKK
Sbjct: 92  FDLENTVPELKSDLKDLFINSASQIDISGNRKAIVVHVPYRLRKGYRKIHLKLVRELEKK 151

Query: 78  FSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTSVHDAMLEDVVYPAEIVGKRIRYRIDG 137
           FSGK+VVLIATRRIVRPPKKGSAVQRPRSRTLTSVH+AMLED+VYPAEIVGKRIRYR+DG
Sbjct: 152 FSGKEVVLIATRRIVRPPKKGSAVQRPRSRTLTSVHEAMLEDIVYPAEIVGKRIRYRLDG 211

Query: 138 SKIIKIFLDPKERNNTEYKLETFAGVYRKLTGKDVVFEYPITEA 181
           SKIIKIFLDPKERNNTEYKLETFAGVYRKL+GKDVVFEYP+TEA
Sbjct: 212 SKIIKIFLDPKERNNTEYKLETFAGVYRKLSGKDVVFEYPLTEA 255


>GSVIVT01008307001 assembled CDS
          Length = 191

 Score =  304 bits (779), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 145/164 (88%), Positives = 159/164 (96%)

Query: 18  FDLENTNPELKSDLKDLFINQAVQMDVSGNRKAVVIYVPYRLRKAYRKIHLRLVRELEKK 77
           FDLENTNPE+KSDLKDL+IN A+Q+DVSG RKAVVI++PYRLRKA+RKIH+RLVRELEKK
Sbjct: 28  FDLENTNPEIKSDLKDLYINSALQVDVSGTRKAVVIHIPYRLRKAFRKIHVRLVRELEKK 87

Query: 78  FSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTSVHDAMLEDVVYPAEIVGKRIRYRIDG 137
           FSGKDV+ IATRRIVRPPKKGSAVQRPRSRTLTSVH+AMLED+V PAEIVGKRIRYR+DG
Sbjct: 88  FSGKDVIFIATRRIVRPPKKGSAVQRPRSRTLTSVHEAMLEDIVLPAEIVGKRIRYRLDG 147

Query: 138 SKIIKIFLDPKERNNTEYKLETFAGVYRKLTGKDVVFEYPITEA 181
           SKIIKIFLDPKERNNTEYKLETFA VYRKL+GKDVVFEYP+TEA
Sbjct: 148 SKIIKIFLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPLTEA 191


>GSVIVT01016480001 assembled CDS
          Length = 192

 Score =  281 bits (718), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 136/162 (83%), Positives = 150/162 (92%)

Query: 18  FDLENTNPELKSDLKDLFINQAVQMDVSGNRKAVVIYVPYRLRKAYRKIHLRLVRELEKK 77
           FDLENTN ELKSDLKD++IN A Q+DVSG RKAVVIYVPYRL+KA+RKIHLRLV ELEKK
Sbjct: 28  FDLENTNLELKSDLKDIYINSAAQIDVSGKRKAVVIYVPYRLQKAFRKIHLRLVGELEKK 87

Query: 78  FSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTSVHDAMLEDVVYPAEIVGKRIRYRIDG 137
           FSGK VVLIA RRI+ PPKKGSAV RPR+RTLT+VH+AMLED+VYPAEIVGK +RYR DG
Sbjct: 88  FSGKHVVLIAARRILHPPKKGSAVVRPRTRTLTAVHEAMLEDIVYPAEIVGKCVRYRADG 147

Query: 138 SKIIKIFLDPKERNNTEYKLETFAGVYRKLTGKDVVFEYPIT 179
           SKIIKIFLDPKE+NNTE KLETFAGVYRKL+GKDVVFEYP+T
Sbjct: 148 SKIIKIFLDPKEQNNTENKLETFAGVYRKLSGKDVVFEYPVT 189