Jatropha Genome Database

JcCB0083591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0083591.10 + phase: 0 
         (160 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019825001 assembled CDS                                       268   9e-73

>GSVIVT01019825001 assembled CDS
          Length = 330

 Score =  268 bits (685), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 126/144 (87%), Positives = 130/144 (90%)

Query: 16  QVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQENVFKVCDQPHPLHVKNMVRQ 75
           +VP+VPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQENVFKVCDQPHPLHVKNMVR 
Sbjct: 186 KVPFVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRN 245

Query: 76  VIEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 135
           V+EGKFDDAC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD
Sbjct: 246 VLEGKFDDACYGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICD 305

Query: 136 GVGSYXXXXXXXXXXXXVRETAKA 159
           GVGSY            VRETAKA
Sbjct: 306 GVGSYLQLCGLLAKLAVVRETAKA 329