Jatropha Genome Database

JcCB0082981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0082981.10 - phase: 0 /pseudo/partial
         (974 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012245001 assembled CDS                                       333   3e-91

>GSVIVT01012245001 assembled CDS
          Length = 1177

 Score =  333 bits (853), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 240/667 (35%), Positives = 345/667 (51%), Gaps = 100/667 (14%)

Query: 322 KEEIMATEVADSEELANKPYPKEEMGTSSSHLSSERSDFDSVGQDIAKSMMTVLLPQAIP 381
           K+E+ A ++   E    + + + E+GT +S+ SSERSDFDSVGQ++AKSMMTVLLPQA+P
Sbjct: 356 KDELTAADMTIFEGSVTESHLEGEVGTYTSNGSSERSDFDSVGQEVAKSMMTVLLPQALP 415

Query: 382 LLKKTSSKKK-----------RIVSPPENLPSIPALHEENNETGFFVEAQFAGVDHSVLK 430
           LLK+TS KKK           R  S  EN  + P ++    E    V+      D  V+ 
Sbjct: 416 LLKETSRKKKATNNHLGLSFYRAESLDENSGACPIVNNSPVEMEEKVQTFRRDFD-PVIP 474

Query: 431 SSEFTKSNVLDTLDDEQREDHIMDQLILPSNNVEADQPSFGKDAYHPEIEKQLININV-K 489
           S E  KS + D+ +D+Q      +  +L S+   ADQ SF KD    +   Q IN++  K
Sbjct: 475 SFEHVKSVIPDSFEDDQCGHDSANGPLLFSDIAGADQASFDKDTCACDTLGQFINVDAWK 534

Query: 490 ESWVSHVETRGGRDILHDDKMQMNLSKRSQDGDLQFSESILGCMSICKKVPSEVNQDVCK 549
           ES V HVET G R                +DG   FS         C K       +V  
Sbjct: 535 ESSVCHVET-GER----------------KDG---FS---------CSKA------NVAS 559

Query: 550 NLVENSLGGEIHSDDFKAASHCNEGTSDASAGALGSSVHLLRKDTVTNTGASGIGNISIS 609
            L ENS+   I S   +      + TS A+   + SSV +  +   +    +  GN    
Sbjct: 560 KLDENSIHHGILS--VEREKTLLDYTSGANTKCMVSSVQISEQSISSKMDGAEAGN---- 613

Query: 610 QPKKVYTRKKVPNTDPMVRKHSPSLLESVGCGKFVDGYIPE---TTGALLQSEPSYTSFS 666
                    ++ +  P+ RK++  L ES+    F D  I +   T G LL +E    S S
Sbjct: 614 ---------QISDVAPLTRKYNGLLSESIIYRNFGDDCILDAYPTVGPLLAAEIHQVSSS 664

Query: 667 VDRLHKKELLSADTRVGEQFHDLHTDKTTITSNPVFDSHAHLISQTQKSDCPSEGQNTSN 726
                KK L S + ++  Q ++L+T+K  I  NP     A++  +        E QN   
Sbjct: 665 ASSPDKKVLFSPEVKLEGQHYNLNTEK--IALNPEESCQAYIDKKL------VEQQNLVK 716

Query: 727 LFVRSTEKPKPHFKVGLVGDETTSDANNPGSEKQGTLFCHNKTLISKEVQGSSELKKQRN 786
           L                          N   +K GT F  N    ++EVQ  + LK    
Sbjct: 717 L--------------------------NRSVQKGGTSFGENNMSNAEEVQAGTNLKAHIK 750

Query: 787 LELNNELEDAVEFLGCYFHPMPVLLLLLSRKGNEIYICAVCGLPVDKNRTLFLYKLAVEE 846
           +E+ ++L    E +GCY HPMPVL +LL+ + +EI+IC +CGL VDK+  LF+YK+ ++E
Sbjct: 751 MEVKHDLVGNTELVGCYVHPMPVLSVLLNTREDEIHICVLCGLLVDKDTILFIYKVTIKE 810

Query: 847 PKIGCPYFVGHTSVAWPSSTDIFGREIAFERSGLQLTPDGKCLVLLGNTRTPYCREGRID 906
           P++  P FVG+T +  P+  D  G E+A +R GLQ TPDG+ LVLL + +TPYCRE +I 
Sbjct: 811 PRLQSPTFVGYTPIILPTLKDRSGGEVALDRFGLQFTPDGQSLVLLNSIKTPYCREQKIP 870

Query: 907 CLCSTCTTDCNENSTVKIVQVQDGYVSVLLKLRTTDSLQCILVCEPDHIIAAGESRGLNL 966
           CLCS C  +C E + +KIVQ++ G++SV+ KL+T DS+QCILVCEP+H++A  ES  L++
Sbjct: 871 CLCSACKLECFEENAIKIVQIKLGFLSVVEKLKTVDSVQCILVCEPNHLVAVEESGRLHV 930

Query: 967 WTMNSTW 973
           W MNSTW
Sbjct: 931 WVMNSTW 937



 Score =  251 bits (641), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/182 (67%), Positives = 136/182 (74%)

Query: 1   KKEMYLQRGKDRYPYPVGYQARRAYNGGTYKMEIQEGHKGPLFVITSADGHLCSGQTADI 60
           KK     RGKDRYPYPVGYQA R +NG  YKMEI EG KGPLFVI SADG LCSGQT DI
Sbjct: 27  KKYWSSSRGKDRYPYPVGYQALRTHNGIRYKMEIHEGPKGPLFVIISADGILCSGQTPDI 86

Query: 61  AWDKFQKKGCPRMKIWHGKRFLCKIDGIEFFGFRNPFVQRLLRELVANVNGVAEHSLLPS 120
           AW+ FQKKGCPR+K  HGKR  CKIDG+EFFGFRNPFVQRLLRELVANVNG AE +LL +
Sbjct: 87  AWEIFQKKGCPRLKTLHGKRLSCKIDGVEFFGFRNPFVQRLLRELVANVNGTAEQTLLSA 146

Query: 121 GTCNGASNMEHNNQCQDSHTCSDLLPYLSRPQVTGKRSKRFKIIDPKSLGIDGLKRLRAG 180
             CN AS  E++ +  DS T  DLLPYL +PQ TGKRS++ K I+ KS+     KRLR  
Sbjct: 147 SFCNRASGAENDTRLPDSCTYPDLLPYLEKPQTTGKRSRKQKNINMKSISGSAHKRLRPR 206

Query: 181 NL 182
            L
Sbjct: 207 EL 208