Jatropha Genome Database

JcCB0082871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0082871.10 - phase: 2 /partial
         (301 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008513001 assembled CDS                                       168   3e-42
GSVIVT01009478001 assembled CDS                                       101   4e-22
GSVIVT01036118001 assembled CDS                                        64   1e-10
GSVIVT01014098001 assembled CDS                                        58   7e-09

>GSVIVT01008513001 assembled CDS
          Length = 281

 Score =  168 bits (425), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 88/183 (48%), Positives = 105/183 (57%), Gaps = 3/183 (1%)

Query: 5   SCTTDGMYLAGGAPSGNAYIWEVANGTLLKTWRAHHKSLKCMIFXXXXXXXXXXXXXXMI 64
           SC+ DG+Y+ GGAPSGNAYIWEVA+G LLKTWRAHHKSL  M+F              MI
Sbjct: 94  SCSKDGVYIVGGAPSGNAYIWEVADGRLLKTWRAHHKSLTSMVFSDDDSLLISGSDDGMI 153

Query: 65  CVWSMLSLLDM---GNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATCKAWDLV 121
            VWSM+SLLD+   G                                   D TCK WDL+
Sbjct: 154 RVWSMISLLDIADCGRFPSLFHSLLEHTSSITGLLSISGSSSPVLVSSSLDGTCKVWDLI 213

Query: 122 SGTLVQTQDYPVGITTIALHPTEQFLFAGSIDGRIFVSVLNIELVDDPFVVAEDQLVVLE 181
            G L++T+ +P  IT I L P EQ LF+GS DGRIFVS+L+  LV DPF V ED+ +VL 
Sbjct: 214 RGRLLRTRVFPTAITAIVLDPGEQLLFSGSADGRIFVSMLDTGLVVDPFKVPEDRPIVLN 273

Query: 182 GHK 184
           GHK
Sbjct: 274 GHK 276


>GSVIVT01009478001 assembled CDS
          Length = 448

 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 93/212 (43%), Gaps = 7/212 (3%)

Query: 5   SCTTDGMYLAGGAPSGNAYIWEVANGTLLKTWRAHHKSLKCMIFXXXXXXXXXXXXXXMI 64
           +   +G Y+AGG  SG+ Y WEVA+G LLK W AH++++ C++F               +
Sbjct: 90  AANREGTYIAGGGLSGDIYFWEVASGRLLKKWHAHYRAVTCLVFSDDESLLISGAEDGCV 149

Query: 65  CVWSMLSLLDMGNXXXX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATCKAWDL 120
            VWS+  + D                                         D TCK W L
Sbjct: 150 RVWSLFMIFDDLRREEAGHLYEHSFSEHTLRVTDIVTGYGGGNAIIVSASEDRTCKVWSL 209

Query: 121 VSGTLVQTQDYPVGITTIALHPTEQFLFAGSIDGRIFVSVLNIELVDDPFVVAEDQLVVL 180
            +G L++   +P  I  IAL P E   +AGS DG+I+++ LN  +           +  L
Sbjct: 210 STGRLLRNVVFPSIIDAIALDPGEHVFYAGSRDGKIYIAALNA-VGSSSNSYGMHIIGSL 268

Query: 181 EGHKGSITALTFSTLG--LISASEDCTISLWD 210
             H  ++T L F+T G  L+S SED  + +WD
Sbjct: 269 SDHSKAVTCLAFATDGILLVSGSEDGMVRVWD 300


>GSVIVT01036118001 assembled CDS
          Length = 169

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 39/62 (62%)

Query: 160 VLNIELVDDPFVVAEDQLVVLEGHKGSITALTFSTLGLISASEDCTISLWDAVSWVPIQK 219
           +L+  L   PF V +D+ +VL GH  SIT L FS LG +S S DCT  LWD  S V I++
Sbjct: 1   MLDTGLEGGPFDVPKDRPIVLNGHNRSITTLVFSRLGPVSVSRDCTAHLWDVASGVIIRR 60

Query: 220 FN 221
           FN
Sbjct: 61  FN 62


>GSVIVT01014098001 assembled CDS
          Length = 375

 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 78/211 (36%), Gaps = 43/211 (20%)

Query: 5   SCTTDGMYLAGGAPSGNAYIWEVANGTLLKTWRAHHKSLKCMIFXXXXXXXXXXXXXXMI 64
           + T DG YL  G  SG+ Y   + +G  ++T+ AH KS+ C+                 I
Sbjct: 87  AATLDGAYLFAGGLSGHIYSISLPSGKTIQTFPAHSKSVSCLEINDDGSLLISGSDDGSI 146

Query: 65  CVWSMLSLLDMGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATCKAWDLVSGT 124
            V  +  L+                                      D TCK W L  G 
Sbjct: 147 VVAPIFQLV----------------------------------ATSPDGTCKFWSLPQGL 172

Query: 125 LVQTQDYPVGITTIALHPTEQFLFAGSIDGRIFVSVLNIELVDDPFVVAEDQLVVL---E 181
           L++T   P  +  +A+ PTE   +A   DG I++             + +  L V+   E
Sbjct: 173 LLRTVALPCPMAGLAIDPTESHFYAAGSDGSIYIGATKSPTRQ----LTKRNLQVIKWRE 228

Query: 182 GHKGSITALTFSTLG--LISASEDCTISLWD 210
            H G + +L     G  L+S SED  + +W+
Sbjct: 229 KHGGPVVSLAMLNQGRNLVSGSEDGNVWIWE 259