Jatropha Genome Database

JcCB0082241.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0082241.10 + phase: 0 /pseudo/partial
         (243 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009903001 assembled CDS                                       356   5e-99
GSVIVT01024106001 assembled CDS                                       345   8e-96
GSVIVT01003925001 assembled CDS                                       275   1e-74
GSVIVT01021005001 assembled CDS                                       206   7e-54
GSVIVT01021002001 assembled CDS                                       200   4e-52
GSVIVT01024417001 assembled CDS                                        95   2e-20
GSVIVT01021262001 assembled CDS                                        85   3e-17
GSVIVT01021057001 assembled CDS                                        64   8e-11

>GSVIVT01009903001 assembled CDS
          Length = 272

 Score =  356 bits (914), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 169/199 (84%), Positives = 181/199 (90%)

Query: 45  AGLSLKSQELTALFLAVRLYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFKLRSSYMDDK 104
           AGLSLKSQELTA+FLAVRLYCS VMEYDIH            WVIYMIRFKL SSYMDDK
Sbjct: 74  AGLSLKSQELTAIFLAVRLYCSLVMEYDIHTILDSATLGTTLWVIYMIRFKLMSSYMDDK 133

Query: 105 DNFAIYYVVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTKIVEPF 164
           DNF IYYVVIPCA+LS +IHPST HHI+NR+CWAFCVYLEA+SVLPQLRVMQNTKIVEPF
Sbjct: 134 DNFKIYYVVIPCALLSLIIHPSTPHHIINRVCWAFCVYLEAISVLPQLRVMQNTKIVEPF 193

Query: 165 TAHYVFALGVARFLNCAHWVLQVLDTRGRLLTALGYGLWPPMVLLSEVVQTFILADFCYY 224
           TAHYVFALGVARFL+CAHWVLQV+D++GR+LTALGYGLWP MVLLSE+VQTFILADFCYY
Sbjct: 194 TAHYVFALGVARFLSCAHWVLQVMDSQGRILTALGYGLWPSMVLLSEIVQTFILADFCYY 253

Query: 225 YVKSLVGGQLVLRLPSGVV 243
           YVKSLVGGQLVLRLPSGVV
Sbjct: 254 YVKSLVGGQLVLRLPSGVV 272


>GSVIVT01024106001 assembled CDS
          Length = 241

 Score =  345 bits (886), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 166/199 (83%), Positives = 179/199 (89%)

Query: 45  AGLSLKSQELTALFLAVRLYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFKLRSSYMDDK 104
           AGLSLKSQELTA+FLAVRLYCSFVMEYDIH            WVIYMIRF+L+SSYM+DK
Sbjct: 43  AGLSLKSQELTAIFLAVRLYCSFVMEYDIHTLLDSATLGTTLWVIYMIRFRLKSSYMEDK 102

Query: 105 DNFAIYYVVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTKIVEPF 164
           DNFAIYYVV PCA+L+ +IHPST HH +NRI WAFCVYLEAVSVLPQLRVMQNTKIVEPF
Sbjct: 103 DNFAIYYVVGPCALLALVIHPSTSHHFVNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPF 162

Query: 165 TAHYVFALGVARFLNCAHWVLQVLDTRGRLLTALGYGLWPPMVLLSEVVQTFILADFCYY 224
           TAHYVFALGVARFL+CAHWVLQVLDTRG LL ALGYGLWP MVL+SE+VQTFILADFCYY
Sbjct: 163 TAHYVFALGVARFLSCAHWVLQVLDTRGHLLVALGYGLWPSMVLISEIVQTFILADFCYY 222

Query: 225 YVKSLVGGQLVLRLPSGVV 243
           Y+KS+VGGQLVLRLPSGVV
Sbjct: 223 YIKSVVGGQLVLRLPSGVV 241


>GSVIVT01003925001 assembled CDS
          Length = 213

 Score =  275 bits (704), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 134/200 (67%), Positives = 162/200 (81%), Gaps = 2/200 (1%)

Query: 45  AGLSLKSQELTALFLAVRLYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFKLRSSYMDDK 104
           +GLSLK+QELTA+FLAVRLYCSFVME DIH            WVIYMIRFKL+S+Y+ + 
Sbjct: 14  SGLSLKTQELTAMFLAVRLYCSFVMEGDIHTVLDLATLISTLWVIYMIRFKLKSTYIKEL 73

Query: 105 DNFAIYY-VVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTKIVEP 163
           DNF IYY VV+P A+L+ L+HP T H +++RICWAFCVYLE+VSVLPQL +MQN K+VEP
Sbjct: 74  DNFPIYYYVVLPSAILAILVHPYTQHSMISRICWAFCVYLESVSVLPQLWLMQNAKMVEP 133

Query: 164 FTAHYVFALGVARFLNCAHWVLQVLDTRGRLLTALGYG-LWPPMVLLSEVVQTFILADFC 222
           FTAHYVFALGVARFL CAHW++QV +  G+ L  +G G LW PM+LL+EVVQTFILADFC
Sbjct: 134 FTAHYVFALGVARFLGCAHWIIQVYEIGGKYLYLIGSGFLWLPMILLAEVVQTFILADFC 193

Query: 223 YYYVKSLVGGQLVLRLPSGV 242
           YYY+KS++ GQLV+ L S V
Sbjct: 194 YYYIKSVMDGQLVMTLSSPV 213


>GSVIVT01021005001 assembled CDS
          Length = 260

 Score =  206 bits (524), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 105/185 (56%), Positives = 130/185 (70%), Gaps = 2/185 (1%)

Query: 45  AGLSLKSQELTALFLAVRLYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFKLRSSYMDDK 104
           +GLSLKSQELTA+ +A R YCSF +E                WVIYMIRFKL+ +Y  + 
Sbjct: 75  SGLSLKSQELTAIVMATRTYCSFEVEEHGLTLLGSAIFLSTLWVIYMIRFKLKPTYSKEL 134

Query: 105 DNFAIYYVVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTKIVEPF 164
           D+  +Y +V+P A+L+ LIHP   H +L RI W+F +YL AVSVLPQLR+MQN K+VEPF
Sbjct: 135 DSMPLYSMVVPPAILAVLIHPHIDHRLLIRIVWSFSLYLAAVSVLPQLRLMQNAKMVEPF 194

Query: 165 TAHYVFALGVARFLNCAHWVLQVLDTRGRLLTALG--YGLWPPMVLLSEVVQTFILADFC 222
           TA+YVFALGVARFLNC  W++ + +T GR L   G    LW  MV+LSE V TFILADFC
Sbjct: 195 TAYYVFALGVARFLNCGSWIIHIYETGGRYLMFSGNWTQLWVLMVILSEFVHTFILADFC 254

Query: 223 YYYVK 227
           YYY+K
Sbjct: 255 YYYLK 259


>GSVIVT01021002001 assembled CDS
          Length = 308

 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/201 (51%), Positives = 134/201 (66%), Gaps = 5/201 (2%)

Query: 45  AGLSLKSQELTALFLAVRLYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFKLRSSYMDDK 104
           +GLSLKSQELTA  +A R YCSF +E                WVIYMIRFKL+ +Y  + 
Sbjct: 75  SGLSLKSQELTATVIAARAYCSFEVEDHTFTLLSSAIFLSTLWVIYMIRFKLKPTYSKEL 134

Query: 105 DNFAIYYVVIPCAVLSFLIHPST-HHHILNRICWAFCVYLEAVSVLPQLRVMQNTKIVEP 163
           D+  +Y +V+P A+L+ LIHP   HH +L RI W+F  YL A+SVLPQLR+MQN K+VEP
Sbjct: 135 DSMPLYSLVVPSAILAVLIHPRHFHHRLLTRIIWSFSFYLGAISVLPQLRLMQNAKMVEP 194

Query: 164 FTAHYVFALGVARFLNCAHWVLQVLDTRGR--LLTALGYGLWPPMVLLSEVVQTFILADF 221
           FTA+YVFALGV RFLNC  W++ + +T G+  +L +    LW  MVLLSE V  FILADF
Sbjct: 195 FTAYYVFALGVGRFLNCGSWIIHIYETGGQYLMLPSNWTQLWVLMVLLSEFVDAFILADF 254

Query: 222 CYYYVKSLVGGQLVLRLPSGV 242
           CYYY+K     Q ++   +G+
Sbjct: 255 CYYYLKRFF--QFIISRSNGI 273


>GSVIVT01024417001 assembled CDS
          Length = 216

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 107/201 (53%), Gaps = 19/201 (9%)

Query: 45  AGLSLKSQELTALFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFK--LRSS 99
           AG+SLK+QEL  +    R   L+  ++  Y+               +++ +R+   ++ +
Sbjct: 30  AGISLKTQELYVIVFVTRYLDLFTRYISLYN--SVMKLVFLGTSIAIVWYMRYHKVVKQT 87

Query: 100 YMDDKDNFAIYYVVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTK 159
           Y   +D F  Y++V+PC VL+ LIH S+    +  I W F +YLEAV+++PQL ++Q ++
Sbjct: 88  YSKQEDTFRHYFLVLPCFVLALLIHRSSS---VTEILWTFSIYLEAVAIVPQLVLLQRSR 144

Query: 160 IVEPFTAHYVFALGVARFLNCAHWVLQVLDTRGRLLTALGYGLWPPMVLLSEVVQTFILA 219
           I++  T +YVF LG  R L   +W  + L           +  W P +  S +VQT + A
Sbjct: 145 IIDNLTGNYVFLLGAYRALYILNWAYRFLVEDNH------HYHWIPWI--SGLVQTALYA 196

Query: 220 DFCYYYVKSLVGGQLVLRLPS 240
           DF YYY KS    +  L+LP+
Sbjct: 197 DFFYYYFKSWKNRE-KLQLPA 216


>GSVIVT01021262001 assembled CDS
          Length = 215

 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 97/200 (48%), Gaps = 18/200 (9%)

Query: 45  AGLSLKSQELTALFLAVR---LYCSFVMEYD-IHXXXXXXXXXXXXWVIYMIRFKLRSSY 100
           +G+SLK+QEL AL    R   L+  F+  Y+ +             W + M R  ++ SY
Sbjct: 30  SGISLKTQELYALVFLTRYLDLFTDFISVYNTVMKLVFIGSSLAIVWCMRMHR-TVKRSY 88

Query: 101 MDDKDNFAIYYVVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTKI 160
               D F  Y++V  C + + ++H          I WAF +YLEAV++LPQL ++Q +  
Sbjct: 89  DGQLDTFRHYFLVAACFLSALIVHEK---FTFQEIFWAFSIYLEAVAILPQLVLLQRSGN 145

Query: 161 VEPFTAHYVFALGVARFLNCAHWVLQVLDTRGRLLTALGYGLWPPMVLLSEVVQTFILAD 220
           V+  T  YVF LG  R L   +W+        R  T   +  W  +  +S +VQT + AD
Sbjct: 146 VDNLTGQYVFFLGAYRALYILNWIY-------RYFTEQHFSRW--IACISGLVQTALYAD 196

Query: 221 FCYYYVKSLVGGQLVLRLPS 240
           F YYY  S       L+LP+
Sbjct: 197 FFYYYFISWKNNS-KLQLPA 215


>GSVIVT01021057001 assembled CDS
          Length = 414

 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 8/138 (5%)

Query: 45  AGLSLKSQELTALFLAVR---LYCSFVMEYD-IHXXXXXXXXXXXXWVIYMIRFKLRSSY 100
           AG+SLK+QEL AL  A R   ++  ++  Y+ +             W I   +  +R SY
Sbjct: 30  AGISLKTQELYALVFATRYLDIFTDYISLYNTVMKLIFLGSSFSIVWYIRHHKI-VRRSY 88

Query: 101 MDDKDNFAIYYVVIPCAVLSFLIHPSTHHHILNRICWAFCVYLEAVSVLPQLRVMQNTKI 160
             D+D F  +++V+PC +L+ +++          + WAF +YLEAV++LPQL ++Q T+ 
Sbjct: 89  DKDQDTFRHFFLVLPCLLLALVMNEK---FTFLEVLWAFSLYLEAVAILPQLVLLQRTRN 145

Query: 161 VEPFTAHYVFALGVARFL 178
           ++  T  YVF LG+ R L
Sbjct: 146 IDNLTGQYVFLLGIIRVL 163