Jatropha Genome Database

JcCB0081401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0081401.10 + phase: 0 /partial
         (218 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012037001 assembled CDS                                       166   8e-42

>GSVIVT01012037001 assembled CDS
          Length = 371

 Score =  166 bits (420), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 76/100 (76%), Positives = 83/100 (83%)

Query: 113 SWIDLYLPRQARPYARLARLDKPIGTWLLTWPCMWSISLAASPGHLPDLKMMXXXXXXXX 172
           SWIDLYLP+QARPYARLARLDKPIGTWLL WPCMWSI+LAA+PGH PD+KM+        
Sbjct: 78  SWIDLYLPKQARPYARLARLDKPIGTWLLAWPCMWSITLAANPGHFPDIKMLALFGTGAL 137

Query: 173 XXXXXXCTINDLLDRDIDTKVERTKLRPIASGLLTPFQGL 212
                 CTINDLLD+DID KVERTKLRPIASG+LTPFQGL
Sbjct: 138 LLRGAGCTINDLLDQDIDPKVERTKLRPIASGILTPFQGL 177