Jatropha Genome Database

JcCB0080951.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080951.20 + phase: 0 /partial
         (513 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026490001 assembled CDS                                        65   8e-11
GSVIVT01006780001 assembled CDS                                        61   1e-09
GSVIVT01017117001 assembled CDS                                        60   3e-09

>GSVIVT01026490001 assembled CDS
          Length = 773

 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 98/239 (41%), Gaps = 38/239 (15%)

Query: 57  SLLGALAERWWDTTNTFHFSWGEMTMTPTDFSLISGIPFGTRPIELYDD--WRTAVTPDR 114
           +L+ AL ERW   T+TFH + GE T+T  D +++ G+     P+    D  W     P+ 
Sbjct: 108 TLITALVERWRQETHTFHLAVGESTITLQDTAVLLGLRVHGDPVTGTTDVQW-----PNL 162

Query: 115 MTELIGIDLPRIVRPSYSTPDLSVSR-HWLS---LQAPDIYARHRQGELTATQVARFTLL 170
             EL+G       RP  ++   S  +  WL    LQ P         +L   Q AR  +L
Sbjct: 163 CEELLG------RRPDGNSLQGSALKLSWLRMHFLQPPS-----DADDLIVQQYARAYIL 211

Query: 171 LLFASSFWSNRK-EKFNPSILKSLEDLAHLTKYDWAGAILSRMYDDMCDLSR-GHCKLSG 228
            L   + ++++         L  L D     +  W  A L+ +Y ++C  S+ G  +++G
Sbjct: 212 ALIGGALFADKSGSDVQLIFLPLLRDFVAAGRLSWGSATLAHLYRELCRASKAGASEIAG 271

Query: 229 TYYFWETWAFEYFPYIRPELSRTDLGLGLVPLAWRWYRANHQSVLRHKFLGDLRSFFDT 287
                + WA+E     RPE               R  R+ H  + R + +G    F D 
Sbjct: 272 PLILLQLWAWERLHVGRPEK--------------RVSRSQHMVIPRGECVGAEPPFLDV 316


>GSVIVT01006780001 assembled CDS
          Length = 630

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 97/240 (40%), Gaps = 31/240 (12%)

Query: 58  LLGALAERWWDTTNTFHFSWGEMTMTPTDFSLISGIPFGTRPIELYDDWRTAVTPDRMTE 117
           L+ AL ERW   TNTFH + GEMT+T  D + + G+     P+         VT   M +
Sbjct: 78  LISALVERWRRETNTFHLNVGEMTVTLEDVAYLLGLAIDGEPV-------MGVTY-TMCD 129

Query: 118 LIGIDLPRIVRPSYSTPDLSVSRHWLS---LQAPDIYARHRQGELTATQVARFT---LLL 171
            I   L      S ST    V   WL     Q P+        +    ++ R T   LL 
Sbjct: 130 TICEKLLGKAPDSGSTSGGMVKLSWLKESFSQCPE--------DAPMEEIERRTRAYLLY 181

Query: 172 LFASSFWSNRKEKFNPSI-LKSLEDLAHLTKYDWAGAILSRMYDDMCDLS-RGHCKLSGT 229
           L  S+ +S       P + L   E+    + Y W  A LS +Y  + + S +    +SG 
Sbjct: 182 LVGSTIFSTTTGNKVPVMYLPLFENFDQASNYAWGAAALSFLYRALGNASLKSQSTVSGC 241

Query: 230 YYFWETWAFEYFPYIRPELSRTDLGLGLVPLAWRWY------RANHQSVLRHKFLGDLRS 283
               + W++ +    RP L++  + +   PL  +W        AN   +   K L  L+S
Sbjct: 242 LTLLQCWSYYHLDIGRPRLNQDSIHVSF-PLVLKWKGKQSGPTANRDLIFYRKALDSLKS 300


>GSVIVT01017117001 assembled CDS
          Length = 1070

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 23/263 (8%)

Query: 36  IIGPSHLDFLRNLELGRQNYKSLLGALAERWWDTTNTFHFSWGEMTMTPTDFSLISGIPF 95
           + G  HL  + ++ +       L+ AL ERW   TN+FH   GEMT+T  D  LI G+P 
Sbjct: 58  MAGFKHLSMITDMSID----APLISALVERWRRETNSFHMRVGEMTITLEDVFLILGLPI 113

Query: 96  GTRPIELYDDWRTAVTPDRMTELIGIDLPRIVRPSYSTPDLSVSRHWLSLQAPDIYARHR 155
              P+         VT      +    L  + R  + +  + V   WL     + ++R  
Sbjct: 114 DGDPV-------IGVTSHACESICRKLLGNVPRSEHRSGRM-VKLSWLR----ESFSRCP 161

Query: 156 QGELTATQVARFT----LLLLFASSFWSNRKEKFNPSILKSLEDLAHLTKYDWAGAILSR 211
           + + +  Q+ R T    L LL  + F S+   K     L+  E+     +Y W  A L+ 
Sbjct: 162 E-DASEEQIKRSTRAYLLYLLGCTIFSSSTGNKVPVMYLQFFENFDDTKRYAWGAAALAY 220

Query: 212 MYDDMCDLS-RGHCKLSGTYYFWETWAFEYFPYIRPELSRTDLGLGLVPLAWRWYRANHQ 270
           +Y  + + S  G   + G+    + W++E+    RP L          P A +W R   +
Sbjct: 221 LYRALGNASLNGQTSICGSITLLQCWSYEHLKVGRPALENFHKSAQDFPRALKWRR-KRK 279

Query: 271 SVLRHKFLGDLRSFFDTCTMDQV 293
                K L   R   DT  +  V
Sbjct: 280 VYSNSKSLSVYREALDTLELSDV 302