Jatropha Genome Database

JcCB0080851.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080851.20 - phase: 1 /partial
         (116 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022229001 assembled CDS                                       149   3e-37
GSVIVT01013668001 assembled CDS                                       103   2e-23
GSVIVT01033029001 assembled CDS                                        62   6e-11

>GSVIVT01022229001 assembled CDS
          Length = 301

 Score =  149 bits (376), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 68/90 (75%), Positives = 80/90 (88%)

Query: 2   VLESGSLPVSSDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYSFCD 61
           +LESGS P S DE+LILK+KSQE+ PYI+GRC+YLVGMMGSGKTT+GK+LS+VL YSFCD
Sbjct: 73  ILESGSFPPSLDEALILKNKSQEILPYIDGRCVYLVGMMGSGKTTIGKILSEVLGYSFCD 132

Query: 62  CDTLIEEEVQGISVAEIFKLYGEGYFRNKE 91
            DTL+E  V+G SVAEIF LYGEG+FRNKE
Sbjct: 133 SDTLVELAVKGTSVAEIFNLYGEGFFRNKE 162


>GSVIVT01013668001 assembled CDS
          Length = 292

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 64/90 (71%)

Query: 2   VLESGSLPVSSDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYSFCD 61
            +ESG+     D + +LK K QEV   +NGRCI+LVGMMGSGKTTVGK+LS+ L YSF D
Sbjct: 65  AVESGNFYACFDGNWLLKKKGQEVASNLNGRCIFLVGMMGSGKTTVGKILSEALGYSFVD 124

Query: 62  CDTLIEEEVQGISVAEIFKLYGEGYFRNKE 91
            DT +E+ V G SV++IF   GE +FR+ E
Sbjct: 125 SDTFVEKAVGGTSVSQIFNQCGEKFFRDYE 154


>GSVIVT01033029001 assembled CDS
          Length = 305

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%)

Query: 10  VSSDESLILKHKSQEVGPYINGRCIYLVGMMGSGKTTVGKVLSQVLAYSFCDCDTLIEEE 69
           V  D SL +K K+ E+ P + G  I+LVGM  + KT VGK+L+  L Y   D D+L+EE 
Sbjct: 79  VDVDLSLAVKKKAMEISPVLKGTSIFLVGMNSTIKTNVGKLLADALRYYHFDSDSLVEEA 138

Query: 70  VQGISVAEIFKLYGEGYFRNKEV 92
             G S A+  K   E  F + E 
Sbjct: 139 CGGESAAKSLKEQDEKGFHDSET 161