Jatropha Genome Database

JcCB0080851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080851.10 + phase: 0 /partial
         (156 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037047001 assembled CDS                                        85   1e-17
GSVIVT01020122001 assembled CDS                                        50   4e-07

>GSVIVT01037047001 assembled CDS
          Length = 203

 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 49/53 (92%)

Query: 104 VRFIQNLFKKVSKQAREAVRSVLPVSISTKLVTFSVNGVLVLAFLWVLKAFLE 156
           VRF+QN+FKK+SK+ R+AVRSVLPV ISTKLV FSV+GVL+L FLWVLKAFLE
Sbjct: 100 VRFVQNVFKKISKRTRKAVRSVLPVPISTKLVGFSVDGVLMLTFLWVLKAFLE 152


>GSVIVT01020122001 assembled CDS
          Length = 210

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 44/53 (83%)

Query: 104 VRFIQNLFKKVSKQAREAVRSVLPVSISTKLVTFSVNGVLVLAFLWVLKAFLE 156
           + F+Q++FKK SK A++A RSVLP +IS +LV+F+V+GVL+LA L ++KA LE
Sbjct: 98  IEFLQSMFKKASKHAKKASRSVLPAAISPQLVSFAVDGVLILASLSIIKALLE 150