Jatropha Genome Database

JcCB0080131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080131.10 + phase: 0 /partial
         (210 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023530001 assembled CDS                                       330   3e-91

>GSVIVT01023530001 assembled CDS
          Length = 285

 Score =  330 bits (846), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 155/206 (75%), Positives = 178/206 (86%)

Query: 5   RFSRSVPENKRLVCVXXXXXXXXXPDSDLNPYEVLGVSPFEGFDKVKAAYTKKLKEAESI 64
           RFSR++P+++R++           PDSDLNPYEVLGVSP EGFD +KAAYT+K KEAE  
Sbjct: 36  RFSRTMPQSRRIIYAAASAAGSSTPDSDLNPYEVLGVSPIEGFDMIKAAYTRKRKEAERK 95

Query: 65  GDEVTASLLEKAYDKLMMSQLTSRKKGVAYGSFKVSKDIKYADKQPIVPWGPRFAKSSIQ 124
           GDE TA+ LEKAYDK+MM+QLT+RKKG+ +GSFKVSKDIKYADKQPIVPW PRF KSS+ 
Sbjct: 96  GDEATAARLEKAYDKVMMAQLTNRKKGMTFGSFKVSKDIKYADKQPIVPWAPRFTKSSVN 155

Query: 125 DMRINLAISGAFIAWILIKRNADYKPLQFLAFAFVYRIFEKLKSFEPPVSPTFTEDGEDD 184
           DMRIN+AIS  F AWILIKRNA++KPLQFLAFA+VYRIFEKLK+FEPPVSPTFTEDGED+
Sbjct: 156 DMRINMAISAVFTAWILIKRNAEWKPLQFLAFAYVYRIFEKLKAFEPPVSPTFTEDGEDE 215

Query: 185 GRALRMGKRLLRSLALVFGCIAFASL 210
           GR LRMGKRLLRSLALVF CIA +SL
Sbjct: 216 GRTLRMGKRLLRSLALVFSCIAVSSL 241