Jatropha Genome Database

JcCB0080081.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080081.20 - phase: 0 /partial
         (64 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018950001 assembled CDS                                       106   2e-24
GSVIVT01031980001 assembled CDS                                        76   3e-15
GSVIVT01038796001 assembled CDS                                        59   7e-10
GSVIVT01002654001 assembled CDS                                        57   3e-09
GSVIVT01002221001 assembled CDS                                        55   6e-09
GSVIVT01002939001 assembled CDS                                        54   1e-08
GSVIVT01031981001 assembled CDS                                        54   2e-08
GSVIVT01035484001 assembled CDS                                        53   2e-08
GSVIVT01009036001 assembled CDS                                        49   3e-07
GSVIVT01004313001 assembled CDS                                        49   4e-07

>GSVIVT01018950001 assembled CDS
          Length = 284

 Score =  106 bits (265), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/59 (83%), Positives = 52/59 (88%)

Query: 1   RIHLLWGENDQIFKLELAQNMKEQLGENATVEGIKKAGHLVHLERPCVYNRLLKQFLKS 59
           +IHLLWGENDQIFK ELA NMKEQLG+ AT +GIKKAGHLVHLERPCVYNR LK FL S
Sbjct: 218 KIHLLWGENDQIFKQELAHNMKEQLGDKATFQGIKKAGHLVHLERPCVYNRHLKLFLAS 276


>GSVIVT01031980001 assembled CDS
          Length = 304

 Score = 75.9 bits (185), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 45/59 (76%)

Query: 1   RIHLLWGENDQIFKLELAQNMKEQLGENATVEGIKKAGHLVHLERPCVYNRLLKQFLKS 59
           RI+LLWG+ D++F LE+A N+KEQLG+ A ++ I+KAGHL   ERPC YN  LK+ L S
Sbjct: 238 RIYLLWGDGDKLFDLEVAHNLKEQLGDKAKLQCIEKAGHLSQFERPCAYNAHLKRILAS 296


>GSVIVT01038796001 assembled CDS
          Length = 311

 Score = 58.5 bits (140), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 37/54 (68%)

Query: 4   LLWGENDQIFKLELAQNMKEQLGENATVEGIKKAGHLVHLERPCVYNRLLKQFL 57
           ++WG+ DQIF +ELA  ++  LGENA +  IK  GH V+LE+P  + + LK FL
Sbjct: 243 IVWGDQDQIFPIELAYRLERHLGENAKLVVIKNTGHAVNLEKPGEFAKHLKSFL 296


>GSVIVT01002654001 assembled CDS
          Length = 298

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 36/54 (66%)

Query: 4   LLWGENDQIFKLELAQNMKEQLGENATVEGIKKAGHLVHLERPCVYNRLLKQFL 57
           ++WGE D++F LELA  +K  +GENA +  IK AGH ++ E+P    + LK FL
Sbjct: 243 IIWGELDRVFPLELAHRLKRHIGENAELVIIKNAGHAINAEKPKELCKYLKSFL 296


>GSVIVT01002221001 assembled CDS
          Length = 77

 Score = 55.1 bits (131), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%)

Query: 4  LLWGENDQIFKLELAQNMKEQLGENATVEGIKKAGHLVHLERPCVYNRLLKQFLKSP 60
          ++WGE D++F LELA  +K  +GENA +  IK AGH ++ E+P    + LK FL  P
Sbjct: 6  IIWGELDRVFPLELAHRLKRHIGENAELVIIKNAGHAINAEKPKELCKYLKSFLIDP 62


>GSVIVT01002939001 assembled CDS
          Length = 124

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query: 4   LLWGENDQIFKLELAQNMKEQLGENATVEGIKKAGHLVHLERPCVYNRLLKQFLKSP 60
           ++WGE D++F LELA  +K  +GENA +  IK  GH ++ E+P    + LK FL  P
Sbjct: 46  IIWGELDRVFPLELAHRLKRHIGENAELVIIKNVGHAINAEKPKELCKYLKSFLMDP 102


>GSVIVT01031981001 assembled CDS
          Length = 364

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 32/55 (58%), Gaps = 7/55 (12%)

Query: 5  LWGENDQIFKLELAQNMKEQLGENATVEGIKKAGHLVHLERPCVYNRLLKQFLKS 59
          LWG   Q   L+       QLGE A ++ I+KAGHL   ERPCVYN  LKQ L S
Sbjct: 9  LWGWAKQTLTLK-------QLGEKAKLQYIEKAGHLAQSERPCVYNAHLKQILAS 56


>GSVIVT01035484001 assembled CDS
          Length = 298

 Score = 53.1 bits (126), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/54 (44%), Positives = 36/54 (66%)

Query: 4   LLWGENDQIFKLELAQNMKEQLGENATVEGIKKAGHLVHLERPCVYNRLLKQFL 57
           ++WG++DQIF L  A  +KE LGE A +E +KK  H+  +E P  +N ++K FL
Sbjct: 243 IIWGDHDQIFPLGKAIELKEVLGEKAKLEVMKKTAHMPQVEFPERFNAIVKNFL 296


>GSVIVT01009036001 assembled CDS
          Length = 342

 Score = 49.3 bits (116), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 4   LLWGENDQIFKLELAQNMKEQLGENATVEGIKKAGHLVHLERPCVYNRLLKQFL 57
           ++WG+ D++F +ELA  +K  LGE A +  I  AGH   +E+P    + LK FL
Sbjct: 286 IIWGDQDKVFPVELAHRLKRHLGEEAQLVIISNAGHTFIIEKPKETFKYLKSFL 339


>GSVIVT01004313001 assembled CDS
          Length = 69

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%)

Query: 7  GENDQIFKLELAQNMKEQLGENATVEGIKKAGHLVHLERPCVYNRLLKQFLKSP 60
          GE D++F LELA  +K  +GENA +  IK AGH ++ E+P    + LK FL  P
Sbjct: 1  GELDRVFPLELAHRLKRHIGENAELVIIKNAGHAINAEKPKELCKYLKSFLIDP 54