Jatropha Genome Database

JcCB0080001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0080001.10 - phase: 0 
         (303 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009517001 assembled CDS                                       172   3e-43

>GSVIVT01009517001 assembled CDS
          Length = 141

 Score =  172 bits (435), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 96/115 (83%), Gaps = 3/115 (2%)

Query: 189 FEVSHILKRYVRKVRPLLFFKGRREDHHLQLHRQSHSFSGNLSLRNKLELGRGRRGEYSA 248
           F+VSH+LKRYVR VRPLLFF+GRR++  +Q  RQ +SFSGNLSLR K EL RGRRGE+SA
Sbjct: 28  FDVSHVLKRYVRMVRPLLFFRGRRDN--IQFRRQPYSFSGNLSLRGKQEL-RGRRGEFSA 84

Query: 249 PASMRTSPTNSGLLVATATLPSSTSDSTMEELXXXXXXXXXHCKNSIAAEDKIKC 303
           PASMRTSPTNSGLLVATATLPSSTSDSTMEEL         HCKNSIA E+K+KC
Sbjct: 85  PASMRTSPTNSGLLVATATLPSSTSDSTMEELQAAIQAAIAHCKNSIAVEEKLKC 139