Jatropha Genome Database

JcCB0079761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0079761.10 + phase: 2 /pseudo/partial
         (165 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024325001 assembled CDS                                       171   2e-43

>GSVIVT01024325001 assembled CDS
          Length = 4326

 Score =  171 bits (433), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 99/127 (77%), Gaps = 1/127 (0%)

Query: 1    DYMQPIESIAFHEIVCFKHVEQLQVALIGDPRKRIQVDLLEFHNIIRCSCCSRSGNSLLP 60
            DYMQP+E I FHEIVCFK+V++LQ AL+GDPR+RIQ+DLLEF  I+ CSCCS S  ++LP
Sbjct: 4167 DYMQPVECIPFHEIVCFKNVDKLQSALMGDPRRRIQLDLLEFQKILLCSCCSNSSKAILP 4226

Query: 61   SMNDSSIMYSLAREQDDLINLHDWYQSFKLVILSSSNKGKHRTKHFPSPKKRKVATEAAK 120
            SM+D+SI+Y+LA+E  DLINLHDWYQSFK  +   S KGKH+ K  P+ KKRK   E+  
Sbjct: 4227 SMHDTSILYTLAQEHGDLINLHDWYQSFKSTVFQPSTKGKHKLKQSPA-KKRKDTNESQN 4285

Query: 121  PTEESIQ 127
             +E SIQ
Sbjct: 4286 QSEASIQ 4292