Jatropha Genome Database

JcCB0079621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0079621.20 - phase: 0 /pseudo/partial
         (207 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026430001 assembled CDS                                       192   7e-50
GSVIVT01026429001 assembled CDS                                       190   4e-49
GSVIVT01026433001 assembled CDS                                       161   2e-40
GSVIVT01026431001 assembled CDS                                       161   3e-40
GSVIVT01022301001 assembled CDS                                       147   4e-36
GSVIVT01030905001 assembled CDS                                        87   4e-18
GSVIVT01011783001 assembled CDS                                        75   2e-14
GSVIVT01029853001 assembled CDS                                        71   4e-13

>GSVIVT01026430001 assembled CDS
          Length = 391

 Score =  192 bits (489), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 95/154 (61%), Positives = 117/154 (75%)

Query: 54  IVGFVIGLVPYIRKLLIGVEAPLHVIRDTTSLLGEAAIPXXXXXXXXXXXXXXXXXXXXK 113
           IVGF+IG+VP++RKL+IG  APLHV++D+ SLLG+AAIP                     
Sbjct: 238 IVGFIIGMVPHLRKLIIGGTAPLHVVQDSASLLGDAAIPSIILIMGGNLLKGLKGSGIQL 297

Query: 114 SVLFGIIVARYIALPLIGIVIVKGALRFGFIPSDPLYQFVLLLQFAVPPAMNIGVITQLF 173
           S + GI+  R+I LPL+GI+IVKGALRFG +  DPL+QFVLLLQ+AVPPA+N+G I QLF
Sbjct: 298 SFIVGILAVRFIFLPLLGIIIVKGALRFGLVHPDPLFQFVLLLQYAVPPAINLGTIIQLF 357

Query: 174 GAGETECSVIMFWAYALASVSLTLWSTIFMWLVA 207
           GAGE+ECSVIM W Y LASVSLTLWST+FMWLV+
Sbjct: 358 GAGESECSVIMLWTYGLASVSLTLWSTLFMWLVS 391


>GSVIVT01026429001 assembled CDS
          Length = 459

 Score =  190 bits (482), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 99/167 (59%), Positives = 118/167 (70%), Gaps = 13/167 (7%)

Query: 54  IVGFVIGLVPYIRKLLIGVEAPLHVIRDTTSLLGEAAIPXXXXXXXXXXXXXXXXXXXX- 112
           I+GF+IG+VP +RKLLIG  APL V++D+TS+LG+AAIP                     
Sbjct: 293 ILGFIIGMVPQLRKLLIGSTAPLRVLQDSTSMLGDAAIPALTLIMGGNLLKEYSRDAMVV 352

Query: 113 ------------KSVLFGIIVARYIALPLIGIVIVKGALRFGFIPSDPLYQFVLLLQFAV 160
                        S+L GIIV RYI LPL+GI IVKGA++ G +  DPLYQFVLLLQ+A+
Sbjct: 353 LFNFSLKGSGIRASLLIGIIVVRYIFLPLLGIAIVKGAVQLGLVNPDPLYQFVLLLQYAL 412

Query: 161 PPAMNIGVITQLFGAGETECSVIMFWAYALASVSLTLWSTIFMWLVA 207
           PPAMNIG ITQLFGAGE+ECSVIM W YALASV+LTLWST+FMWLVA
Sbjct: 413 PPAMNIGTITQLFGAGESECSVIMLWTYALASVALTLWSTLFMWLVA 459


>GSVIVT01026433001 assembled CDS
          Length = 379

 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/154 (54%), Positives = 103/154 (66%)

Query: 54  IVGFVIGLVPYIRKLLIGVEAPLHVIRDTTSLLGEAAIPXXXXXXXXXXXXXXXXXXXXK 113
           I GF IGL+P IRKL+IG  APL VI  + +LLGEAAIP                     
Sbjct: 226 IFGFFIGLIPPIRKLIIGDSAPLRVIESSATLLGEAAIPSTTLIMGANLLSGLKGSDVSI 285

Query: 114 SVLFGIIVARYIALPLIGIVIVKGALRFGFIPSDPLYQFVLLLQFAVPPAMNIGVITQLF 173
            V+ GI+  RYI LPL+G+V+VK A  FG + S+ L+QFVL+LQ+AVPPAM  GVI QLF
Sbjct: 286 VVILGIVAVRYIFLPLLGVVVVKAATHFGLVGSNLLFQFVLMLQYAVPPAMGTGVICQLF 345

Query: 174 GAGETECSVIMFWAYALASVSLTLWSTIFMWLVA 207
             G++ECSVIM W YA+A  +LTLWST FMWLV+
Sbjct: 346 QFGQSECSVIMLWTYAVAGFALTLWSTFFMWLVS 379


>GSVIVT01026431001 assembled CDS
          Length = 418

 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 80/154 (51%), Positives = 105/154 (68%)

Query: 54  IVGFVIGLVPYIRKLLIGVEAPLHVIRDTTSLLGEAAIPXXXXXXXXXXXXXXXXXXXXK 113
           IVGF IGL+  IRKL+IG  APLHVI  +   +GEAA+P                     
Sbjct: 265 IVGFFIGLISPIRKLIIGDSAPLHVIESSAYFVGEAAVPSTTLIMGANLLKGLKGSDVSI 324

Query: 114 SVLFGIIVARYIALPLIGIVIVKGALRFGFIPSDPLYQFVLLLQFAVPPAMNIGVITQLF 173
            V+ GI+  RYIALPL+G+V+VK A  FG + S+ L+QFVL+LQ+A+PPAM+ G ++QLF
Sbjct: 325 VVILGIMAVRYIALPLLGVVVVKAAHHFGLVGSNSLFQFVLMLQYALPPAMSTGTMSQLF 384

Query: 174 GAGETECSVIMFWAYALASVSLTLWSTIFMWLVA 207
             G++ECSVIM W YA+A+ SLTLWS+ FMWLV+
Sbjct: 385 EFGQSECSVIMLWTYAVAAFSLTLWSSFFMWLVS 418


>GSVIVT01022301001 assembled CDS
          Length = 421

 Score =  147 bits (370), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/154 (45%), Positives = 97/154 (62%)

Query: 54  IVGFVIGLVPYIRKLLIGVEAPLHVIRDTTSLLGEAAIPXXXXXXXXXXXXXXXXXXXXK 113
           I+GFV G VP+++  L G EAPL V++D+  LL    IP                     
Sbjct: 268 ILGFVFGAVPWLKNFLTGDEAPLRVVQDSVKLLANGTIPCITLILGGNLTRGLRSSGIKP 327

Query: 114 SVLFGIIVARYIALPLIGIVIVKGALRFGFIPSDPLYQFVLLLQFAVPPAMNIGVITQLF 173
           S++  +I  RY  LPLIGI +VK A   GF+ SDPLY +VL++QF +PPAMNIG +T+LF
Sbjct: 328 SIIIAVICVRYFILPLIGIAVVKAASNLGFVLSDPLYLYVLMIQFTLPPAMNIGTMTELF 387

Query: 174 GAGETECSVIMFWAYALASVSLTLWSTIFMWLVA 207
             G+ ECSV+  W Y  A+++LT+WSTI+MWL++
Sbjct: 388 NVGQEECSVLFLWTYLFAALALTVWSTIYMWLLS 421


>GSVIVT01030905001 assembled CDS
          Length = 442

 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 1/151 (0%)

Query: 53  QIVGFVIGLVPYIRKLLIGVEAPLHVIRDTTSLLGEAAIPXXXXXXXXXXXXXXXXXXXX 112
            ++  +IG+ P ++  + G +APL  I D+ S+L  AAIP                    
Sbjct: 284 SLLAIIIGMFPQLKSFVFGYDAPLSFITDSLSILAGAAIPFVLLILGGMLAEGPHESKLG 343

Query: 113 KSVLFGIIVARYIALPLIGIVIVKGALRFGF-IPSDPLYQFVLLLQFAVPPAMNIGVITQ 171
              + GI VAR + LPLIGI I+  A +  F +P D +Y+FVLLLQ+  P A+ +G I  
Sbjct: 344 IRTVIGISVARLLVLPLIGIGIILLADKMNFLVPGDKMYRFVLLLQYTTPSAILLGAIAS 403

Query: 172 LFGAGETECSVIMFWAYALASVSLTLWSTIF 202
           L G   +E S ++FW +  A  SL+L+  I+
Sbjct: 404 LRGYAVSEASALLFWQHVFAVFSLSLYIIIY 434


>GSVIVT01011783001 assembled CDS
          Length = 406

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 1/156 (0%)

Query: 53  QIVGFVIGLVPYIRKLLIGVEAPLHVIRDTTSLLGEAAIPXXXXXXXXXXXXXXXXXXXX 112
            ++  ++G+VP  +  + G +APL  I D+  +L  A +P                    
Sbjct: 249 SLLAIIVGMVPQFKSFVFGHDAPLSFITDSLEILAGAMVPSVMLVLGGMLAEGPNDSKLG 308

Query: 113 KSVLFGIIVARYIALPLIGIVIVKGALRFGF-IPSDPLYQFVLLLQFAVPPAMNIGVITQ 171
                GI VAR + LPL+GI IV  A +  F +  D +  FVLLLQ+  P A+ +G I  
Sbjct: 309 LRTTIGISVARLLVLPLLGIGIVFLADKLNFLVHGDQMSIFVLLLQYTTPSAILLGAIAS 368

Query: 172 LFGAGETECSVIMFWAYALASVSLTLWSTIFMWLVA 207
           L G    E S ++FW +  A  SL+L+  I+  L++
Sbjct: 369 LRGYAVKEASALLFWQHVFALFSLSLYIVIYFKLLS 404


>GSVIVT01029853001 assembled CDS
          Length = 376

 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 2/152 (1%)

Query: 53  QIVGFVIGLVPYIRKLLIGVEAPLHVIRDTTSLLGEAAIPXXXXXXXXXXXXXXXXXXXX 112
            I+   IG +P+++KL+    APL    D+  +LGEA IP                    
Sbjct: 222 SILALAIGAIPFLKKLIFTPNAPLFFFTDSLIILGEAMIPCILLALGGNLVDGPGSSKLG 281

Query: 113 KSVLFGIIVARYIALPLIGIVIVKGALRFGFI-PSDPLYQFVLLLQFAVPPAMNIGVITQ 171
                 II  R + +P  GI IV  A + GF+ P D +++FVLLLQ ++P ++  G I  
Sbjct: 282 LRTTTAIIFGRLVLVPPAGIGIVLLADKLGFLPPDDKMFRFVLLLQHSMPTSVLSGAIAN 341

Query: 172 LFGAGETECSVIMFWAYALASVSLTLWSTIFM 203
           L G G  E + ++FW +  A  S+  W  +++
Sbjct: 342 LRGCGR-ESAAVLFWVHIFAIFSMAGWIVLYL 372