Jatropha Genome Database

JcCB0079131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0079131.10 - phase: 2 /pseudo
         (261 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032155001 assembled CDS                                       378   e-105
GSVIVT01033285001 assembled CDS                                       351   2e-97
GSVIVT01008737001 assembled CDS                                       150   6e-37
GSVIVT01023969001 assembled CDS                                       100   7e-22
GSVIVT01024322001 assembled CDS                                        79   2e-15
GSVIVT01011713001 assembled CDS                                        78   3e-15
GSVIVT01008429001 assembled CDS                                        75   2e-14
GSVIVT01011715001 assembled CDS                                        70   7e-13
GSVIVT01009017001 assembled CDS                                        51   5e-07

>GSVIVT01032155001 assembled CDS
          Length = 421

 Score =  378 bits (971), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/200 (88%), Positives = 188/200 (94%)

Query: 1   YEKYHVHYGGAEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAHRVKGESLRESIKRH 60
           YEKYHV YGG EEERKANY+DMVNKYYDLVTSFYEFGWGESFHFA R KGESLRESI+RH
Sbjct: 97  YEKYHVCYGGEEEERKANYSDMVNKYYDLVTSFYEFGWGESFHFAPRWKGESLRESIRRH 156

Query: 61  EHFLALQLGLKPGQKVLDVGCGIGGPLREIARFSLTSVTGLNNNEYQISRGKELNRIAGV 120
           EHFLALQLG+KPGQKVLDVGCGIGGPLREIARFS TSVTGLNNNEYQI+RG+ELN IAGV
Sbjct: 157 EHFLALQLGVKPGQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQITRGRELNCIAGV 216

Query: 121 DKTCDFVKADFMKMPFPDSSFDAVYAIEATCHAPDAYGCYSQIYRVLKPGQRFAAYEWCM 180
           DKTCDFVKADFMKMPF D++FDAVYAIEATCHAPDA GCY +IYRVLKPGQ FAAYEWCM
Sbjct: 217 DKTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDALGCYKEIYRVLKPGQCFAAYEWCM 276

Query: 181 TDSFDPNNQEHQKIKRKLRL 200
           TD+FDPNNQEHQKIK ++ +
Sbjct: 277 TDAFDPNNQEHQKIKAEIEI 296


>GSVIVT01033285001 assembled CDS
          Length = 343

 Score =  351 bits (901), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 163/200 (81%), Positives = 180/200 (90%)

Query: 1   YEKYHVHYGGAEEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAHRVKGESLRESIKRH 60
           YEKYHV +GG EEER+ANYTDMVNKYYDL TSFYE+GWGESFHFA R KGESLRESIKRH
Sbjct: 29  YEKYHVCHGGDEEERRANYTDMVNKYYDLATSFYEYGWGESFHFASRWKGESLRESIKRH 88

Query: 61  EHFLALQLGLKPGQKVLDVGCGIGGPLREIARFSLTSVTGLNNNEYQISRGKELNRIAGV 120
           EHFLA+QLGLK GQKVLDVGCGIGGPLREIARFS TS+TGLNNNEYQI+RGKELNR+AGV
Sbjct: 89  EHFLAVQLGLKCGQKVLDVGCGIGGPLREIARFSDTSITGLNNNEYQITRGKELNRLAGV 148

Query: 121 DKTCDFVKADFMKMPFPDSSFDAVYAIEATCHAPDAYGCYSQIYRVLKPGQRFAAYEWCM 180
           DKTC+F  ADFMKMPF + +FDAV+AIEATCHAPD   CY +IYRVLKPGQ FAAYEWC+
Sbjct: 149 DKTCNFELADFMKMPFSNDTFDAVFAIEATCHAPDVLDCYKEIYRVLKPGQCFAAYEWCI 208

Query: 181 TDSFDPNNQEHQKIKRKLRL 200
           TD FDP N+EHQ+IK ++ L
Sbjct: 209 TDCFDPMNREHQRIKGEVEL 228


>GSVIVT01008737001 assembled CDS
          Length = 281

 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 99/151 (65%), Gaps = 3/151 (1%)

Query: 12  EEERKANYTDMVNKYYDLVTSFYEFGWGESFHFAHRVKGESLRESIKRHEHFLALQLGLK 71
           E E      D V+ +Y+LVT  YE+GWG+SFHF+  V G+S R++ + HE      + +K
Sbjct: 67  EIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPAVPGKSHRDATRLHEEMAVDLIDVK 126

Query: 72  PGQKVLDVGCGIGGPLREIARFSLTSVTGLNNNEYQISRGKELNRIAGVDKTCDFVKADF 131
           PG ++LDVGCG+GGP+R IA  S  +V G+  NEYQ++R +  NR AG+D  C+ V  +F
Sbjct: 127 PGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNRKAGLDSLCEVVCGNF 186

Query: 132 MKMPFPDSSFDAVYAIEATCHAPDAYGCYSQ 162
           ++MPF D+SFD  Y+IEAT       GC+S+
Sbjct: 187 LQMPFADNSFDGAYSIEATSR---TRGCHSR 214


>GSVIVT01023969001 assembled CDS
          Length = 183

 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 60/85 (70%)

Query: 94  SLTSVTGLNNNEYQISRGKELNRIAGVDKTCDFVKADFMKMPFPDSSFDAVYAIEATCHA 153
           S  +V G+  NEYQ++R    N+ AG++  C+ V  +F++MPFPD+SFD  Y+IEATCHA
Sbjct: 75  SGANVVGITINEYQVNRAHLHNKKAGLESQCEVVCGNFLEMPFPDNSFDGAYSIEATCHA 134

Query: 154 PDAYGCYSQIYRVLKPGQRFAAYEW 178
           P     YS+I+RVLKPG  + +YEW
Sbjct: 135 PKLEEVYSEIFRVLKPGSMYVSYEW 159


>GSVIVT01024322001 assembled CDS
          Length = 263

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 69  GLKPGQKVLDVGCGIGGPLREIARFSLTSVTGLNNNEYQISRGKELNRIAGVDKTCDFVK 128
           G K  ++V+DVGCGIGG  R +A+    S  G+  +  Q  R + L    G+     F  
Sbjct: 38  GEKRPKRVVDVGCGIGGSSRYLAKKYGASCQGITLSPLQAQRAQTLAASQGLADKVSFQV 97

Query: 129 ADFMKMPFPDSSFDAVYAIEATCHAPDAYGCYSQIYRVLKPGQRFAAYEWCMTDSFDPNN 188
           AD +  PFPD  FD V+++E+  H PD     S++ RV+ PG       WC  D   P+ 
Sbjct: 98  ADALDQPFPDGQFDLVWSMESGEHMPDKKKFVSELARVVAPGGTIILVTWCHRD-LSPSE 156

Query: 189 QEHQKIKRKL 198
           +  +  ++ L
Sbjct: 157 ESLKPEEKAL 166


>GSVIVT01011713001 assembled CDS
          Length = 484

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 46  HRVKGESLRES--IKRHEHFLALQLGLKPGQKVLDVGCGIGGPLREIARFSLTSVTGLNN 103
            R+ GE    +  ++  + F+A +L LKPGQKVLDVGCGIGG    +A      V G++ 
Sbjct: 246 ERIFGEGFVSTGGLETTKEFVA-KLELKPGQKVLDVGCGIGGGDFYMAEDFNVEVVGIDL 304

Query: 104 NEYQISRGKELNRIAGVDKTCDFVKADFMKMPFPDSSFDAVYAIEATCHAPDAYGCYSQI 163
           +   IS    L+R  G ++  +F  AD  K  +PDS+FD +Y+ +   H  D    +   
Sbjct: 305 SINMISIA--LDRAIGRNRLVEFEVADCTKKTYPDSTFDVIYSRDTILHIQDKPALFRSF 362

Query: 164 YRVLKPGQRFAAYEWC 179
           ++ LKPG +    ++C
Sbjct: 363 FKWLKPGGKVLISDYC 378


>GSVIVT01008429001 assembled CDS
          Length = 491

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 5/136 (3%)

Query: 46  HRVKGESLRES--IKRHEHFLALQLGLKPGQKVLDVGCGIGGPLREIARFSLTSVTGLNN 103
            RV GE    +  I+  + F+  +L LKPGQKVLDVGCGIGG    +A      V G++ 
Sbjct: 255 ERVFGEGFVSTGGIETTKEFVG-KLDLKPGQKVLDVGCGIGGGDFYMAENFDVEVVGIDL 313

Query: 104 NEYQISRGKELNRIAGVDKTCDFVKADFMKMPFPDSSFDAVYAIEATCHAPDAYGCYSQI 163
           +   +S    L R  G+  + +F  AD  K  +PD++FD +Y+ +   H  D    +   
Sbjct: 314 SINMVSFA--LERAIGLKCSVEFEVADCTKKSYPDNTFDVIYSRDTILHIQDKPALFKSF 371

Query: 164 YRVLKPGQRFAAYEWC 179
           ++ LKPG +    ++C
Sbjct: 372 FKWLKPGGKVLISDYC 387


>GSVIVT01011715001 assembled CDS
          Length = 475

 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 2/113 (1%)

Query: 67  QLGLKPGQKVLDVGCGIGGPLREIARFSLTSVTGLNNNEYQISRGKELNRIAGVDKTCDF 126
           +L LKP QKVLDVGCGIGG    +A      V G++ +   IS    L R  G     +F
Sbjct: 261 KLDLKPSQKVLDVGCGIGGGDFYMAEDFDVEVVGIDLSINMISIA--LERAIGRKCLVEF 318

Query: 127 VKADFMKMPFPDSSFDAVYAIEATCHAPDAYGCYSQIYRVLKPGQRFAAYEWC 179
             AD  K  +PD++FD +Y+ +   H  D    +   ++ LKPG +    ++C
Sbjct: 319 EVADCTKKTYPDNTFDVIYSRDTILHIQDKPALFKSFFKWLKPGGKVLITDYC 371


>GSVIVT01009017001 assembled CDS
          Length = 350

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 14/162 (8%)

Query: 29  LVTSFYEFGWGESFHFAHRVKGESLRESIKRHEHFLALQLGLKP--GQKVLDVGCGIGGP 86
           L++  YE GW ++F +      E   E  K +         LKP  G  ++D  CG G  
Sbjct: 142 LISFLYERGWRQNFIWGGFPGLEKEFELAKGY---------LKPVLGGTIVDASCGSGLF 192

Query: 87  LREIARFSLTS-VTGLNNNEYQISRGKE-LNRIAGVDK-TCDFVKADFMKMPFPDSSFDA 143
            R  A+  L S V  L+ +E  + +  E + +  G  K     V+AD  ++PF  SS DA
Sbjct: 193 SRTFAKSGLFSLVVALDFSENMLRQCYEFIKQEEGFPKENILLVRADISRLPFASSSVDA 252

Query: 144 VYAIEATCHAPDAYGCYSQIYRVLKPGQRFAAYEWCMTDSFD 185
           V+A  A    P      ++I RVL+PG  F A  + +   F 
Sbjct: 253 VHAGAALHCWPSPSIAVAEISRVLRPGGVFVATTYLLDGPFS 294