Jatropha Genome Database

JcCB0078661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0078661.10 - phase: 0 
         (203 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023826001 assembled CDS                                       222   8e-59
GSVIVT01012083001 assembled CDS                                        66   9e-12
GSVIVT01006720001 assembled CDS                                        62   1e-10

>GSVIVT01023826001 assembled CDS
          Length = 286

 Score =  222 bits (566), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 103/133 (77%), Positives = 119/133 (89%)

Query: 59  MTSNSKLSDHSDILPSVLTAADLDRFADVANKLADASGEVIRKYFRKKFEILDKDDSSPV 118
           M SNSKLS+    +   L  ++LDRFADV NK+ADA+GEVIR YFRKKF+IL K+D SPV
Sbjct: 1   MASNSKLSNQIQNISLGLNDSELDRFADVGNKVADAAGEVIRGYFRKKFDILQKEDLSPV 60

Query: 119 TIADKAAEESMISIILENFPSHAIYGEENGWRCKEKFSDYVWVLDPIDGTKSFITGKPLF 178
           TIAD+AAEESM+SI+LE+FPSHAIYGEENGWRCKEKF+DYVWVLDPIDGTKSFITGKPLF
Sbjct: 61  TIADQAAEESMVSILLESFPSHAIYGEENGWRCKEKFADYVWVLDPIDGTKSFITGKPLF 120

Query: 179 GTLIALLHQGKPV 191
           GTLIALLH+G+P+
Sbjct: 121 GTLIALLHKGRPI 133


>GSVIVT01012083001 assembled CDS
          Length = 368

 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 87  VANKLADASGEVIRKYFRKKFEILDKDDSSPVTIADKAAEESMISIILENFPSHAIYGEE 146
           V    A+   +V+ +   K   +  K  +  VT  DK +E +++ ++ +NF  H I GEE
Sbjct: 87  VVEHAANTGAQVVMEAVNKPRNVTYKGLTDLVTDTDKMSEAAILEVVRKNFGDHLILGEE 146

Query: 147 NGWRCKEKFSDYVWVLDPIDGTKSFITGKPLFGTLIALLHQGKP 190
            G    +  SDY+W +DP+DGT +F    P F   + +L +GKP
Sbjct: 147 GG-LIGDTSSDYLWCIDPLDGTTNFAHCYPSFAVSVGVLFRGKP 189


>GSVIVT01006720001 assembled CDS
          Length = 297

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 79  ADLDRFADVANKLADASGEVIRKYFRKKFEILDKDDSSPVTIADKAAEESMISIILENFP 138
             L +F + A   A  +GE+IR+ F +   +  K     VT  DKA E+ + + + +++P
Sbjct: 5   GSLSQFLETAVDAAKRAGEIIRRGFYQTKNVEHKGQVDLVTETDKACEDLIFNHLQQHYP 64

Query: 139 SHAIYGEENGWRCK--EKFSDYVWVLDPIDGTKSFITGKPLFGTLIAL 184
            H + GEE    C   E      W++DP+DGT +F+ G P     I L
Sbjct: 65  EHKLIGEETTAACGTMELTDSPTWIVDPLDGTTNFVHGFPFVCVSIGL 112