Jatropha Genome Database

JcCB0078191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0078191.10 + phase: 1 /partial/short
         (34 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022129001 assembled CDS                                        63   3e-11

>GSVIVT01022129001 assembled CDS
          Length = 372

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 32/34 (94%)

Query: 1   DRFSDSLRKAGWSSEEVSDALGFDFRPEKEKETG 34
           DRFSDSLRKAGWSSEEVSDALGFD+RPEKE++  
Sbjct: 310 DRFSDSLRKAGWSSEEVSDALGFDYRPEKERKPA 343