Jatropha Genome Database

JcCB0078111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0078111.10 - phase: 0 /partial
         (316 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033895001 assembled CDS                                       351   2e-97
GSVIVT01036083001 assembled CDS                                       335   1e-92

>GSVIVT01033895001 assembled CDS
          Length = 370

 Score =  351 bits (901), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 186/313 (59%), Positives = 205/313 (65%), Gaps = 1/313 (0%)

Query: 1   MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60
           MSQTGKLMPNLDQ STK+LNLTVLQR+DPFIEEILITAAHVTFYEFNIE NQWSRKDVEG
Sbjct: 1   MSQTGKLMPNLDQHSTKLLNLTVLQRMDPFIEEILITAAHVTFYEFNIELNQWSRKDVEG 60

Query: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNS 120
           SLFVVKRN+QPRFQFIVMNRRNT+NLVENLLGDFEY+VQVPYLLYRNAAQEVNGIWFYNS
Sbjct: 61  SLFVVKRNSQPRFQFIVMNRRNTDNLVENLLGDFEYDVQVPYLLYRNAAQEVNGIWFYNS 120

Query: 121 RECEEVANLFSRILNAYXXXXXXXXXXXXXXEFEELEAVPSMSVIEGPLXXXXXXXXXXX 180
           RECEEVANLFSRILNAY              EFEELEAVP+M+V+EG L           
Sbjct: 121 RECEEVANLFSRILNAYSKVPPKPKLSSSKSEFEELEAVPTMAVMEGMLEPSSTASATTD 180

Query: 181 XXXXXXXXXXXNATMVIGSSAANLANSRQPYHSTATIPLSTHTPNVVSPPSHNPQI-XXX 239
                       A M IGS+ +N+ANS Q Y  + T+P  +H P+VV  P    Q+    
Sbjct: 181 APEDSTFVNFFGAAMNIGSNTSNVANSGQSYQPSITVPSFSHAPSVVPSPVPTLQVPSLP 240

Query: 240 XXXXXXXXVAIHDAPDPISSSNRVTNLVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 299
                   + IH+ PDPISSSN  TNLVK                               
Sbjct: 241 RSASSTPPLPIHETPDPISSSNLATNLVKPSSFFAPPSSSSALIMPPMPSSMPTAGLHPP 300

Query: 300 XXXQRPYGTPLLQ 312
              QRPYG P+LQ
Sbjct: 301 LNLQRPYGAPMLQ 313


>GSVIVT01036083001 assembled CDS
          Length = 369

 Score =  335 bits (860), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 176/312 (56%), Positives = 201/312 (64%)

Query: 1   MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEG 60
           MSQ GKLMPNLDQQSTK+LNLTVLQRIDPF+EEILITAAHVTFYEFNI+ +QWSRKDVEG
Sbjct: 1   MSQNGKLMPNLDQQSTKILNLTVLQRIDPFVEEILITAAHVTFYEFNIDLSQWSRKDVEG 60

Query: 61  SLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNS 120
           SLFVVKRNTQPRFQFIVMNRRNT+NLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYN+
Sbjct: 61  SLFVVKRNTQPRFQFIVMNRRNTDNLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNA 120

Query: 121 RECEEVANLFSRILNAYXXXXXXXXXXXXXXEFEELEAVPSMSVIEGPLXXXXXXXXXXX 180
           RECEEVANLF+RILNAY              EFEELEAVP+M+V++GPL           
Sbjct: 121 RECEEVANLFTRILNAYSKVPPKTKVSSTKSEFEELEAVPTMAVMDGPLEPSSSTSSNVA 180

Query: 181 XXXXXXXXXXXNATMVIGSSAANLANSRQPYHSTATIPLSTHTPNVVSPPSHNPQIXXXX 240
                       +  V   +A+++A + QPY S+AT PL +  PN +       Q+    
Sbjct: 181 DVPDDPSFVNFFSEAVTIGNASSVAVTGQPYQSSATPPLPSCPPNAIPGTVPTLQLASPP 240

Query: 241 XXXXXXXVAIHDAPDPISSSNRVTNLVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
                  + + D   PIS+SNR TNLVK                                
Sbjct: 241 QSTSTSLIPLLDTSQPISTSNRTTNLVKPSSFFGPPSSSPLMMPPLSSAMPTAPPLHPPV 300

Query: 301 XXQRPYGTPLLQ 312
             QRPYG P+LQ
Sbjct: 301 TLQRPYGAPMLQ 312