Jatropha Genome Database

JcCB0077821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0077821.10 + phase: 0 
         (362 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026967001 assembled CDS                                       460   e-130

>GSVIVT01026967001 assembled CDS
          Length = 271

 Score =  460 bits (1183), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/271 (82%), Positives = 241/271 (88%)

Query: 92  MVVHGHDTTLPISLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSTKQAVDTAVRVLKEG 151
           MVVHGHDTTLPISLEEMLVHCRAVARGAKRPLLVGDLPFGTYESS+ QAVD AVR+LKEG
Sbjct: 1   MVVHGHDTTLPISLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSSNQAVDAAVRILKEG 60

Query: 152 GMDAIKLEGGSPSRITAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNISSAVKVVE 211
            MDAIKLEGGSPSRITAAK+IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNI+SAVKVVE
Sbjct: 61  TMDAIKLEGGSPSRITAAKSIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNIASAVKVVE 120

Query: 212 TSLALQEVGCFSVVLECXXXXXXXXXTSALRIPTIGIGAGPFCSGQVLVYHDLLGMLQHP 271
           T++ALQE GCF+VVLEC         TSALRIPTIGIGAGPFCSGQVLVYHDLLGM+QHP
Sbjct: 121 TAMALQEAGCFAVVLECVPAPVAAATTSALRIPTIGIGAGPFCSGQVLVYHDLLGMMQHP 180

Query: 272 HHAKVTPKFCKQYAQVGDVINKALLEYKEEVTNSSFPGPAHSPYKINAADINGLLNELQK 331
           HHAKVTPKFCK+Y QVG+VINKALLEYKEEVTN SFPGPAHSPYKI +A+++G LNELQK
Sbjct: 181 HHAKVTPKFCKRYGQVGEVINKALLEYKEEVTNGSFPGPAHSPYKICSAEVDGFLNELQK 240

Query: 332 LGLNKXXXXXXXXXEKIKTSESLAGSGPAND 362
           LGL+K         EKI+TSESL G  P +D
Sbjct: 241 LGLDKAASAAAEAAEKIETSESLEGKSPKSD 271