Jatropha Genome Database

JcCB0077031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0077031.10 - phase: 0 /TE
         (1148 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010555001 assembled CDS                                        66   1e-10
GSVIVT01006319001 assembled CDS                                        64   3e-10

>GSVIVT01010555001 assembled CDS
          Length = 147

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 918 MDETTAFLHGDLEEEIYMEXPEGFIKKGREDCVCKLKKSLYGLKQALRQWYKKFESIMGE 977
           MD   AFL+GDL EE+YM+ P G   +  +  VC L+++LYGLKQA R W+ KF S +  
Sbjct: 1   MDVKNAFLNGDLSEEVYMQPPPGLSVESNK--VCHLRRALYGLKQAPRAWFAKFSSTIFR 58

Query: 978 HGYRKTTSD 986
            GY  +  D
Sbjct: 59  LGYTASPYD 67


>GSVIVT01006319001 assembled CDS
          Length = 604

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 4/75 (5%)

Query: 102 LTKLMNFKYQEDTSVADHLSEMQATIHHLSNIGIKFDDKIFDLMVLASLPESWETLKISI 161
           + KL N K  E+ SVA HL+E       ++++ I F+D+I  L+VLASLP SWET++++I
Sbjct: 1   MKKLFNLKMTENASVAQHLNEFNT----ITSVEIDFNDEIRALIVLASLPNSWETMRMAI 56

Query: 162 TNSTPHSGVSWEFVK 176
           +NST    + + +++
Sbjct: 57  SNSTGKENLKYNYIR 71