Jatropha Genome Database

JcCB0076221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0076221.10 + phase: 0 /partial
         (108 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010598001 assembled CDS                                       154   1e-38
GSVIVT01036145001 assembled CDS                                       148   4e-37
GSVIVT01033829001 assembled CDS                                       144   8e-36
GSVIVT01003663001 assembled CDS                                       115   3e-27
GSVIVT01008404001 assembled CDS                                       115   4e-27

>GSVIVT01010598001 assembled CDS
          Length = 173

 Score =  154 bits (388), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 83/108 (76%), Gaps = 2/108 (1%)

Query: 1   VMVDPDAPSPSDPNLREYLHWLVTDIPATTGVTFGQEIVCYESPRPSLGIHRFVFILFRQ 60
           +M DPDAPSPSDP L+E+LHW+V DIP TT  +FG+EIV YE P+P +GIHR+ FILF+Q
Sbjct: 68  IMTDPDAPSPSDPYLKEHLHWIVADIPGTTDASFGKEIVSYEPPKPVIGIHRYAFILFKQ 127

Query: 61  LGRQTVYPPGWRQNFNTRDFAELYNLGSPVAAVYFNCQRESGTGGRRR 108
            GR+TV PP  R +FNTR FAE   LGSPVAAVYFN QR   T  RRR
Sbjct: 128 RGRETVMPPASRDHFNTRKFAEDNGLGSPVAAVYFNAQRP--TAARRR 173


>GSVIVT01036145001 assembled CDS
          Length = 173

 Score =  148 bits (374), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 83/108 (76%), Gaps = 2/108 (1%)

Query: 1   VMVDPDAPSPSDPNLREYLHWLVTDIPATTGVTFGQEIVCYESPRPSLGIHRFVFILFRQ 60
           +M DPD P PSDP LRE+LHW+VTDIP TT  TFG+EIV YE PRP++GIHRFVF+LF+Q
Sbjct: 68  IMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGREIVNYEMPRPNIGIHRFVFLLFKQ 127

Query: 61  LGRQTVYPPGWRQNFNTRDFAELYNLGSPVAAVYFNCQRESGTGGRRR 108
             RQTV PP  R  F+TR+FAE   LG PVAAV+FN QRE  T  R+R
Sbjct: 128 KRRQTVNPPSSRDRFSTRNFAEENELGPPVAAVFFNAQRE--TAARKR 173


>GSVIVT01033829001 assembled CDS
          Length = 172

 Score =  144 bits (363), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 82/108 (75%), Gaps = 2/108 (1%)

Query: 1   VMVDPDAPSPSDPNLREYLHWLVTDIPATTGVTFGQEIVCYESPRPSLGIHRFVFILFRQ 60
           VM DPD P PSDP LRE+LHW+VTDIP TT  TFG+E++ YE P+P++GIHRFVF+LF+Q
Sbjct: 67  VMTDPDVPGPSDPYLREHLHWIVTDIPGTTDATFGREVLSYEIPKPNIGIHRFVFVLFKQ 126

Query: 61  LGRQTVYPPGWRQNFNTRDFAELYNLGSPVAAVYFNCQRESGTGGRRR 108
             RQTV  P  R +FNTR FA   +LG PVAAV+FN QRE  T  RRR
Sbjct: 127 KRRQTVNTPTSRDHFNTRSFAAENDLGLPVAAVFFNAQRE--TAARRR 172


>GSVIVT01003663001 assembled CDS
          Length = 175

 Score =  115 bits (289), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 67/102 (65%), Gaps = 2/102 (1%)

Query: 1   VMVDPDAPSPSDPNLREYLHWLVTDIPATTGVTFGQEIVCYESPRPSLGIHRFVFILFRQ 60
           VMVDPDAPSPS+P  RE+LHW+V DIP     T G+E+V Y  P+P  GIHR++F LF+Q
Sbjct: 68  VMVDPDAPSPSEPTFREWLHWIVVDIPEGCDATQGREVVPYMGPQPPTGIHRYIFTLFKQ 127

Query: 61  --LGRQTVYPPGWRQNFNTRDFAELYNLGSPVAAVYFNCQRE 100
                    PP  R NF+TR FA    LG PVA VYFN Q+E
Sbjct: 128 KAAAMSGTLPPDTRSNFSTRQFAAGNGLGPPVALVYFNSQKE 169


>GSVIVT01008404001 assembled CDS
          Length = 172

 Score =  115 bits (288), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 74/109 (67%), Gaps = 3/109 (2%)

Query: 1   VMVDPDAPSPSDPNLREYLHWLVTDIPATTGVTFGQEIVCYESPRPSLGIHRFVFILFRQ 60
           VM DPDAPSPS+P++RE++HW+V DIP  T  T G+E + Y  PRP +GIHR++ +LF+Q
Sbjct: 66  VMTDPDAPSPSEPSMREWVHWIVADIPGGTNATRGKEALPYVGPRPPVGIHRYILVLFQQ 125

Query: 61  LG-RQTVYPPGWRQNFNTRDFAELYNLGSPVAAVYFNCQRESGTGGRRR 108
                 V  PG R +F+TR FA   +LG PVA VYFN Q+E     RRR
Sbjct: 126 KAPLGLVEQPGSRAHFSTRAFANQLDLGLPVATVYFNAQKEPAN--RRR 172