Jatropha Genome Database

JcCB0076151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0076151.10 + phase: 0 /pseudo
         (220 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015263001 assembled CDS                                       142   2e-34

>GSVIVT01015263001 assembled CDS
          Length = 210

 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 89/160 (55%), Gaps = 1/160 (0%)

Query: 17  ILQIFYESQDFFXXXXXXXXXXXXXVIXXXXXXXXXXXXXXXXXXXXKIGTSVYFWSLPS 76
           +L+IFYESQ+FF             VI                    KIGTSVYFWSLPS
Sbjct: 1   MLEIFYESQNFFLLKELEKLGPKKGVISQSVKDVVQSLVDDDLVAKDKIGTSVYFWSLPS 60

Query: 77  CAGNQLRNVYRRLESDVQSSKKRYAELVDQCGGLKKGXXXXXXXXXXXXXXXXXXXKHNE 136
           CAGNQLRNV+R+LESD+QS KKR +EL DQC  LKKG                   KH E
Sbjct: 61  CAGNQLRNVHRKLESDLQSGKKRLSELADQCDTLKKGREESDEREEALGELKAIELKHKE 120

Query: 137 LKEEMGQYADNDPAAFEAMKSYTAKTAQITSSRCDNGVQT 176
           LK+EMGQY+DNDPAAFE MK    + A   ++R  + + T
Sbjct: 121 LKDEMGQYSDNDPAAFEEMKK-AIEVAHAAANRWTDNIFT 159