Jatropha Genome Database

JcCB0075891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0075891.10 - phase: 0 /partial
         (143 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035857001 assembled CDS                                        80   3e-16

>GSVIVT01035857001 assembled CDS
          Length = 439

 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 1/132 (0%)

Query: 11  LMDFDNLVVPIDGLETAHQNGVREQSPASGEEGVFSNSANGNIEKITVSTEPDGNLDDAS 70
           +MD D+L+ P++GLE  HQNG+ EQ  A+G EGV     NGN++  T S   +GN ++  
Sbjct: 8   VMDVDDLL-PVNGLEEGHQNGIHEQLSAAGGEGVIPEKVNGNLDLSTESAGMNGNAENVG 66

Query: 71  KLEDSGTGNSYAVEFREGSNVHVGSNGFTGSKEGELKDGSQSEQVKSLKGPGKGKNEKPS 130
             +D+G  N+   E  EGS++    NG T S++ E++D   S+  K  KG GK   EK S
Sbjct: 67  MWDDNGIINASTAEVGEGSHIRARVNGLTISEDLEVEDADPSKHSKPQKGQGKSSKEKLS 126

Query: 131 NRKTVSATXEKK 142
           + K    T  KK
Sbjct: 127 SPKHAGTTWVKK 138