Jatropha Genome Database

JcCB0075691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0075691.10 + phase: 0 /pseudo
         (131 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000115001 assembled CDS                                       135   5e-33
GSVIVT01000122001 assembled CDS                                       135   6e-33
GSVIVT01011346001 assembled CDS                                       105   4e-24
GSVIVT01020070001 assembled CDS                                       104   1e-23
GSVIVT01029194001 assembled CDS                                        87   2e-18

>GSVIVT01000115001 assembled CDS
          Length = 164

 Score =  135 bits (340), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 83/105 (79%)

Query: 3   SKGPGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQHK 62
           SKGPGLF+D GKKA+D+L +DY +DQKF +S+ +++GVAITS  V+KGGLS GDV+ Q+K
Sbjct: 2   SKGPGLFADIGKKAKDLLTRDYISDQKFTVSTYSDTGVAITSTAVKKGGLSTGDVAVQYK 61

Query: 63  FKNGSLDVKLDTQSNILTTLRLTDFPSSTKVIASLKLPDYNSGKV 107
           +KN  +DVK DT SNI TTL  T+   STK IAS K PDYNSGK+
Sbjct: 62  YKNSVIDVKADTGSNINTTLTFTEIIPSTKTIASFKFPDYNSGKL 106


>GSVIVT01000122001 assembled CDS
          Length = 276

 Score =  135 bits (339), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 83/105 (79%)

Query: 3   SKGPGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQHK 62
           SKGPGLF+D GKKA+D+L +DY +DQKF +S+ +++GVAITS  V+KGGLS GDV+ Q+K
Sbjct: 2   SKGPGLFADIGKKAKDLLTRDYISDQKFTVSTYSDTGVAITSTAVKKGGLSTGDVAVQYK 61

Query: 63  FKNGSLDVKLDTQSNILTTLRLTDFPSSTKVIASLKLPDYNSGKV 107
           +KN  +DVK DT SNI TTL  T+   STK IAS K PDYNSGK+
Sbjct: 62  YKNSVIDVKADTGSNINTTLTFTEIIPSTKTIASFKFPDYNSGKL 106


>GSVIVT01011346001 assembled CDS
          Length = 276

 Score =  105 bits (263), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 74/104 (71%)

Query: 4   KGPGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQHKF 63
           KGPGL+++ GKKARD+L+KDY +D K  I+SC+ +GVAITS+  +KG + + DV+TQ K 
Sbjct: 3   KGPGLYTEIGKKARDLLYKDYQSDHKLTITSCSPTGVAITSSGTKKGDIFVADVNTQLKN 62

Query: 64  KNGSLDVKLDTQSNILTTLRLTDFPSSTKVIASLKLPDYNSGKV 107
           KN + DVK+DT SN+  T+ + +     K I + K+PD  SGKV
Sbjct: 63  KNITTDVKIDTSSNLFVTVTVDEPAPGLKSIFNFKVPDQRSGKV 106


>GSVIVT01020070001 assembled CDS
          Length = 240

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 72/104 (69%)

Query: 4   KGPGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQHKF 63
           KGPGL+SD GK ARD+L++DY +D KF +++   SGVAITS+  +KG L I DV+TQ K 
Sbjct: 3   KGPGLYSDIGKIARDLLYRDYQSDHKFTVTTYTSSGVAITSSGTKKGELFIADVNTQLKN 62

Query: 64  KNGSLDVKLDTQSNILTTLRLTDFPSSTKVIASLKLPDYNSGKV 107
           KN + DVK+DT SN+ TT+ + +     K I S  +PD  SGKV
Sbjct: 63  KNITTDVKVDTNSNLFTTITVDEPAPGLKTIFSFIIPDQRSGKV 106


>GSVIVT01029194001 assembled CDS
          Length = 277

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 64/103 (62%)

Query: 5   GPGLFSDFGKKARDVLFKDYSTDQKFAISSCAESGVAITSNVVEKGGLSIGDVSTQHKFK 64
           GP  FSD GKK RD+L KDY+ D KF +   +  G+ +T+   +K  +  GDVST +K  
Sbjct: 4   GPAPFSDIGKKTRDLLNKDYNFDHKFTLLMQSPGGMGVTATGWKKDQIFFGDVSTLYKSG 63

Query: 65  NGSLDVKLDTQSNILTTLRLTDFPSSTKVIASLKLPDYNSGKV 107
           N ++D+KLDT SN+ T +   D    TKV  S K+PD+ SGK+
Sbjct: 64  NTTVDLKLDTHSNVSTKVTAHDILPCTKVACSFKIPDHKSGKL 106