Jatropha Genome Database

JcCB0075571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0075571.10 - phase: 0 /partial
         (700 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035337001 assembled CDS                                       362   e-100
GSVIVT01016905001 assembled CDS                                       333   1e-91

>GSVIVT01035337001 assembled CDS
          Length = 671

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 273/711 (38%), Positives = 351/711 (49%), Gaps = 130/711 (18%)

Query: 1   MRGPKDEEKIMSPIFPRLHVNDTEKGGPKAPPRNKMALYEQLSIPSQRFXXXXXXXXXXX 60
           M+  KDEEKIM P+FPRLHVNDTEKGGP+APPRNKMALYEQLS+PSQR            
Sbjct: 1   MKRGKDEEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSVPSQRCNPGVMPLKSNN 60

Query: 61  XXXXXKLIPSMALSQGGSFERSTFCNXXXXXXXXXXXXXXXGGVKLSTKMASPEWKSMNS 120
                 L+P  + SQG   ER  F                   +  ST    PE      
Sbjct: 61  AS---NLVPPASSSQGSGHERGVFFPHH---------------ISPSTPTHLPEKLHARH 102

Query: 121 TDDRNLKTTQPLSFIAESNSFQSHNFANFKNVSCNKFGDEKDFGVPTSSQSGAVLLCSSK 180
           +D   L T                  A F+     K GDE DF VP    SG        
Sbjct: 103 SDAVILNTP----------------LAQFEQR--KKQGDEDDFRVPIFVHSGTEF----- 139

Query: 181 HNKEQDSQPCWNLSFSMQFQNGSEKRRKGTGTVNQKARESMRKQAEENAKISHAFLDPVE 240
           H + Q+S     L+ S    + +   ++  G VN+K   S R+ +E++A           
Sbjct: 140 HGRNQNSIDREILTPS----SSTCLDKRSQGDVNRKDYVSSREYSEKSA----------- 184

Query: 241 RPASVPSVQDKTSVDASSSPSAKVKRTESLKRAHPLSNQENSSSSGNVLKGLHGTN-SWL 299
                            S+ S K K  ES+K+ +  S+++    S      LH T+ +W 
Sbjct: 185 -----------------SNLSTKEKIDESMKQVNKPSSEDFRDQSSANFSSLHDTDDAW- 226

Query: 300 NKNFIEMQDRKIVHKDKDLVEFALSMGKENASKMRHESCSWFSLGNYNRSHSDIENVIKT 359
                                        NAS++R  S S   LG    S S+ +N    
Sbjct: 227 -----------------------------NASRVRSSSYSGDGLG----SPSEPDNDGAC 253

Query: 360 NQDKY-GSLQVGNVQRRDDVSKTSMMDSVSAFGITSDNVIRVIGEGQFWEARRAIVKQQR 418
             DK  G+LQ GNV   DD+S+TSM+DS+S   IT D+V+ +IG+  FW+ARRAIV QQR
Sbjct: 254 RGDKTCGTLQKGNVDTNDDLSETSMVDSMSGLDITPDDVVGIIGQKHFWKARRAIVNQQR 313

Query: 419 EFKIQVFELHRLIKVQMLIAGSPDLLLEDNIYLAKASLEVSPVKKVASENAREQPPLIDK 478
            F +QVFELHRLIKVQ LIAGSP L+++++ YL K SL+ SP KK+  E   + PP +  
Sbjct: 314 VFAVQVFELHRLIKVQRLIAGSPHLMVDESAYLGKPSLKSSPAKKLPLEYVVKPPPNMVM 373

Query: 479 QKDVSQKPYPSAEFADENAVVKLPLPHVNNETSKGLLTQQSNDGSHSEGVLLSPIAANTR 538
            KD  ++     E + ENAV K  LP V N          SN G +      +P   +++
Sbjct: 374 HKDDYERASHQLECSAENAVGKTHLPSVKNGNPP------SNYGPYIGNPPPAPAPTDSK 427

Query: 539 QSPWCFP-PQGNQWLVPVMSHSEGLVYKPYAGPCPPTAGFIAPVYGKCGPMNLPAGGGDF 597
             PWC+P P G+QWLVPVMS SEGLVYKPY GP     GF++ V G CGPM      G F
Sbjct: 428 MGPWCYPQPPGHQWLVPVMSPSEGLVYKPYPGP-----GFMSTVCGGCGPMGSAPMTGSF 482

Query: 598 LNAACGV-----QQGIGILPMIPPLGQTYFPPHAMPVMS-PSISVSAVELVTPFIAPP-- 649
           +N A GV      QGIG+ P  PP+G  YFPP+ M VM+ P+IS SAVE +  F      
Sbjct: 483 INPAYGVPSSHHHQGIGVHPGTPPIGHGYFPPYGMSVMNHPTISGSAVEQMNRFAGHGSL 542

Query: 650 SKDNQSSAGDIKFAFPHQSSCNMLSQMSRVILCGGKFQASKESEVQESTAS 700
           S+  Q S G   F   HQ+SCN+ +   R I  G KF  SK+SE Q STAS
Sbjct: 543 SQSGQLSGGGASFNMQHQNSCNVPTP-KRAIPQGVKFPMSKDSEFQGSTAS 592


>GSVIVT01016905001 assembled CDS
          Length = 730

 Score =  333 bits (855), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 257/712 (36%), Positives = 358/712 (50%), Gaps = 78/712 (10%)

Query: 11  MSPIFPRLHVNDTEKGGPKAPPRNKMALYEQLSIPSQRFXXXXXXXXXXXXXXXXKLIPS 70
           MSP+FPRLHVND EKGGP+APPRNKMALYEQLS+P  +                  L+PS
Sbjct: 1   MSPLFPRLHVNDAEKGGPRAPPRNKMALYEQLSVP--KVPSRSTVILPLLPNNSGSLVPS 58

Query: 71  MALSQGGSFERST---FC-NXXXXXXXXXXXXXXXGGVKLSTKMASPEWKSMNSTDDRNL 126
              +QG   ER+    FC                  GV +S ++ + E KS       N+
Sbjct: 59  APSTQGSGHERNVVTPFCYTPTSAHSDENHHFHSSSGVNMSFELTNLEQKSGTFYHIPNV 118

Query: 127 KTTQPLSFIAESNSFQSHNFANFKNVSCNKFGDEKDFGVPTSSQSGAVL-LCSSKHNKEQ 185
               PL   A  +  Q H+ +  KN        E D  VPT  QSG +    ++  N  +
Sbjct: 119 TGQLPLQ--ANCSYSQPHSLSKLKN-----HRGEDDSEVPTFCQSGIIPDYYNAPQNMNK 171

Query: 186 DSQPCWNLSFSMQFQNGSEKRRKGTGTVNQKARESMRKQAEENAKISHAFLDPVERPASV 245
           +   C +L+ S+Q ++   K ++     +  +RES+   A           +P +R  + 
Sbjct: 172 ERATCLDLNSSVQLESACGKHQRNLNVSH--SRESISATASSGLLTRDEIFEPSKRARTS 229

Query: 246 PSVQDKTSVDASSSPSAKVKRTESLKRAHPLSNQENSSSSGNVLKGLHGTNSWLNKNFIE 305
            + ++K +V         V  T  L+  H                 LH            
Sbjct: 230 LTKENKRNV---------VVDTNRLEDIH---------------DSLH------------ 253

Query: 306 MQDRKIVHKDKDLVEFALSMGKENASKMRHESCSWFSLGNYNRSHSDIENVIKTNQDKYG 365
            Q    + ++ DL   + ++G    S     +    SL + +R    +E+ ++  Q +  
Sbjct: 254 -QGSMTLPENTDLPNPSKAVGGGYVS-----TSPKPSLLDGHRRSGGLEHELE-EQKESE 306

Query: 366 SLQVGNVQRRDDVSKTSMMDSVSAFGITSDNVIRVIGEGQFWEARRAIVKQQREFKIQVF 425
           SLQ+G++ R   VS  +M+ S+  F I+ D+V+ +IG   FW+ R AIV QQR F +QVF
Sbjct: 307 SLQMGSIDRNCHVSNANMVGSMLGFDISPDDVVGIIGHKHFWKTRNAIVNQQRVFAVQVF 366

Query: 426 ELHRLIKVQMLIAGSPDLLLEDNIYLAKASLEV------SPVKKVASENAREQPPLIDKQ 479
           ELHRLIKVQ LIAGSP+  L++N+YLA+ +         SP KK+ SE+ ++ P  I   
Sbjct: 367 ELHRLIKVQRLIAGSPEGQLDNNLYLAEPASSTKKLPSESPTKKLPSESVQQLPSQIADP 426

Query: 480 KDVSQKPYPSAEFADENAVVKLPLPHVNNETSKGLLTQQSNDGSHSEGVLLSPIAANTRQ 539
           K+ SQK   + E A ++AV   P      +  K    QQ+N         +S +A +T+ 
Sbjct: 427 KNGSQKQDSNNEGAVKDAVGNPPFASP-VDVDKIYAAQQTNQRPLENQPPVS-MATDTQP 484

Query: 540 SPWCF-PPQGNQWLVPVMSHSEGLVYKPYAGPCPPTAGFIAPVYGKCGPMNLPAGGGDFL 598
           + WCF P QGNQWLVPVMS SEGL+YKPYAG C PT   ++P YG   P+NL   GGDF 
Sbjct: 485 TSWCFHPSQGNQWLVPVMSPSEGLIYKPYAGQCSPTPRLMSPFYGNYRPVNLTVMGGDFF 544

Query: 599 NAACGV----QQGIGILPMIPPLGQTYFPPHAMPVMSPSISVSAVELVTPFIAPPSK--D 652
           N   G+    QQGI I+P  P LGQTYFPP+  P+++PS S SAVE +   +   S   +
Sbjct: 545 NTTYGIPISLQQGIEIVPSNPFLGQTYFPPYGKPLVNPSTSGSAVEQMNLSVGDQSSRPN 604

Query: 653 NQSSAGDIKF---AFPHQSSCNMLSQMSRVIL-CGGKFQASKESEVQESTAS 700
           N  S GDI     +  +QS  NM SQ S  IL C GKFQASK SE+Q STAS
Sbjct: 605 NHVSVGDINATVQSVHYQSLGNMPSQKSGGILGCFGKFQASKSSELQVSTAS 656