Jatropha Genome Database

JcCB0075081.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0075081.30 - phase: 0 /partial
         (119 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000035001 assembled CDS                                       157   1e-39

>GSVIVT01000035001 assembled CDS
          Length = 299

 Score =  157 bits (396), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 91/119 (76%), Gaps = 1/119 (0%)

Query: 1   EENVDIIIHHILGVVDSFLKRSNQLHEMMTSETKQEEFKTLVCDAARPFLAARTDRFVNE 60
           EE+VDII+HHILGV+DS +KR+ Q  + +T E KQEEFK  V DAARPFL  RTDRFVNE
Sbjct: 182 EEDVDIIVHHILGVLDSVIKRTEQKGQTITPERKQEEFKASVSDAARPFLTGRTDRFVNE 241

Query: 61  LELFLASGFNIEAYDDVYIQQLGWNTPGATGESADVEPSVAIPAVPYLYIFDDDSDETD 119
           +ELFLASG NIEAYD+VY+QQLGW  P AT E  + E +     VPYLY+FD DSD TD
Sbjct: 242 VELFLASGLNIEAYDEVYLQQLGWTNPMATTEGVE-EQNGHTHVVPYLYLFDYDSDGTD 299