Jatropha Genome Database

JcCB0074501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0074501.10 + phase: 2 /partial
         (270 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019618001 assembled CDS                                       231   2e-61
GSVIVT01038588001 assembled CDS                                       221   2e-58
GSVIVT01027183001 assembled CDS                                       193   8e-50
GSVIVT01026540001 assembled CDS                                       166   1e-41
GSVIVT01014389001 assembled CDS                                       144   4e-35
GSVIVT01034183001 assembled CDS                                       123   8e-29

>GSVIVT01019618001 assembled CDS
          Length = 665

 Score =  231 bits (590), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/263 (47%), Positives = 157/263 (59%), Gaps = 44/263 (16%)

Query: 8   NWCILHGSDGRLQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDGVD 67
           N C     D  LQ+ AQ  LQGKKK   KRITGFQ+  SDP+++MV SADS VRIL G D
Sbjct: 447 NCCFYDIIDNHLQVDAQIYLQGKKKLPGKRITGFQFSPSDPTKVMVASADSLVRILCGAD 506

Query: 68  VICKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPRVKTNWACEHFF 127
           VICK+RG+ N GS  S  FT+ G HI+SASEDSN+++W+Y  +D    R K  W+CE F 
Sbjct: 507 VICKFRGVRNVGSHTSTSFTADGKHIVSASEDSNVHLWDYNNQDRASSRAKDIWSCESFL 566

Query: 128 SNNASVAIPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXXXXX 187
           S+NA++AIPW    CG       M+TT     +E C    ++                  
Sbjct: 567 SHNATIAIPW----CG-------MKTT-----TETCPSPTLT------------------ 592

Query: 188 XXXXXXHGFFSESLPKGSATWPEENLPSSLSMSPKMFKSQYKFLRTSYQSVHGSPHAWNL 247
                     ++SLP+GSATWPEE LP S   SP M +S+YKFL+++ Q+   SPH W L
Sbjct: 593 ----------TKSLPRGSATWPEEKLPDSSPFSPSMRRSEYKFLKSACQNTASSPHTWGL 642

Query: 248 AIVTAGWDGRIRWFQNYGLPVRL 270
            IVTAGWDG IR + NYGLP RL
Sbjct: 643 VIVTAGWDGWIRTYHNYGLPHRL 665


>GSVIVT01038588001 assembled CDS
          Length = 674

 Score =  221 bits (564), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/259 (50%), Positives = 158/259 (61%), Gaps = 26/259 (10%)

Query: 15  SDGRLQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDGVDVICKYRG 74
           SD  LQL +Q CL GKKKS  KRITGFQ+   DPS +MVT ADS+VRIL G +VI KY+G
Sbjct: 439 SDNHLQLESQMCLHGKKKSLCKRITGFQFSPQDPSTVMVTCADSQVRILHGTNVIGKYKG 498

Query: 75  IHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGP-VPRVKTNWACEHFFSNNASV 133
           + NAG+Q+SA FTS G HI+SA +DSN+YVWN + +  P + + K+  A EHF + NASV
Sbjct: 499 LRNAGNQMSASFTSDGKHIVSACDDSNVYVWNCSNEGEPALSQSKSIRAFEHFLT-NASV 557

Query: 134 AIPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXXXXXXXXXXX 193
           AIPW G+  GN                    E     H  L ESS               
Sbjct: 558 AIPWCGMKYGNP-------------------ENGWQFHA-LDESSPNTLPFPSPASFSLS 597

Query: 194 HGFFSESLPKGSATWPEENLPSS--LSMSPKMFKSQYKFLRTSYQSVHGSPHAWNLAIVT 251
             FFSES PKGSATWPEE LP+S  +S+  K+ KS++KFL+    +   S HAW L IVT
Sbjct: 598 QEFFSESFPKGSATWPEEKLPTSSLVSVPSKIHKSEHKFLKACQST--SSSHAWGLVIVT 655

Query: 252 AGWDGRIRWFQNYGLPVRL 270
           AGWDGRIR F NYGLP  L
Sbjct: 656 AGWDGRIRSFHNYGLPAPL 674


>GSVIVT01027183001 assembled CDS
          Length = 617

 Score =  193 bits (490), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 96/127 (75%), Positives = 106/127 (83%), Gaps = 1/127 (0%)

Query: 14  GSDGRLQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDGVDVICKYR 73
            SD RLQLHA  CLQGKKKS+ KRITGFQ+  SDPS+LMVTSADS+VRILDGVDVICKYR
Sbjct: 435 ASDDRLQLHALICLQGKKKSSFKRITGFQFSPSDPSKLMVTSADSQVRILDGVDVICKYR 494

Query: 74  GIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPV-PRVKTNWACEHFFSNNAS 132
           G+ NAGSQISA FTS G HI+SASEDSN+YVWN   +D PV  + K NW+CE FFSNNAS
Sbjct: 495 GLRNAGSQISASFTSDGMHIVSASEDSNVYVWNCISQDVPVHSQAKNNWSCERFFSNNAS 554

Query: 133 VAIPWPG 139
           VAIPW G
Sbjct: 555 VAIPWCG 561


>GSVIVT01026540001 assembled CDS
          Length = 668

 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 105/280 (37%), Positives = 144/280 (51%), Gaps = 33/280 (11%)

Query: 2   VALVNTNWCILHGSDGRLQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVR 61
           V  V    C  + S   LQL A+    G+KK++  +ITG Q+   +  ++M+TS DSK+R
Sbjct: 411 VGSVTGTCCFYNASGNHLQLDAKVNFHGRKKTSGNKITGIQFSQEESQKVMITSEDSKLR 470

Query: 62  ILDGVDVICKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDG----PVPRV 117
           ILDG+DV+ KY+G+  +GSQ+SA FTS G HI+S  EDS +YVWNY   DG       ++
Sbjct: 471 ILDGIDVVYKYKGLRKSGSQMSASFTSTGRHIVSVGEDSRVYVWNY---DGFCSQSSKQM 527

Query: 118 KTNWACEHFFSNNASVAIPWPGLACGNSA-SSDIMRTTLPFMNSERCNEEQMSVHKELGE 176
           K+  +CEHFF    SVAIPW           SD +R + P        ++ +     + +
Sbjct: 528 KSVQSCEHFFFEGVSVAIPWSDTGAEKKGLGSDSLRQSPP-------TQDHLEATSWIRD 580

Query: 177 SSQCKXXXXXXXXXXXXHGFFSESLPKGSATWPEENLPSSLSMSPK-MFKSQYKFLRTSY 235
           S +              + F  +   +G ATWPEE LP  L  +P+          +  +
Sbjct: 581 SER----------FSLGNWFSMDGSCRGGATWPEEKLP--LWGAPEHDHHHHDHQQQQQH 628

Query: 236 QSVHGSPH-----AWNLAIVTAGWDGRIRWFQNYGLPVRL 270
             V    H     AW L I TAGWDG IR F NYGLPVRL
Sbjct: 629 NDVQNHNHLALSEAWGLVIATAGWDGTIRTFHNYGLPVRL 668


>GSVIVT01014389001 assembled CDS
          Length = 749

 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 135/263 (51%), Gaps = 26/263 (9%)

Query: 10  CILHG-SDGRLQLHAQKCLQGKKKSASKR-ITGFQYFSSDPSRLMVTSADSKVRILDGVD 67
           C L+  S+ +LQ   Q  LQ KKK    + ITGFQ+     S +++TSADS++R++DGVD
Sbjct: 511 CRLYNTSENKLQPKGQINLQNKKKKPHHKKITGFQFAPGSSSEVLITSADSRIRVIDGVD 570

Query: 68  VICKYRGIHNAGSQISALFTSGGTHIISASEDSNIYVWNYAIKDGPVPRVKTNWACEHFF 127
           +I K++G  N   QISA  T  G +++ ASEDS +YVW +  + G    +    + EHF 
Sbjct: 571 LIHKFKGFRNTNRQISASVTENGKYVVCASEDSYVYVWKHDTRPGRSKGIAVTRSYEHFH 630

Query: 128 SNNASVAIPWPGLACGNSASSDIMRTTLPFMNSERCNEEQMSVHKELGESSQCKXXXXXX 187
           S + SVAIPWPG+              + ++N +   E   SV       S C       
Sbjct: 631 SQDVSVAIPWPGMGDTWELQDSFSGEQIEYINGD---EGSPSV-------SVCTSSPLNG 680

Query: 188 XXXXXXHGFFSESLPKGSATWPEENLPSSLSMSPKMFKSQYKFLRTSYQSVHGSPHAWNL 247
                 +G+F + +   SATWPEE L         +  ++      S    +GS  AW +
Sbjct: 681 TISSATNGYFFDRI---SATWPEEKL---------LLATKNTSPHASVDFANGS--AWGM 726

Query: 248 AIVTAGWDGRIRWFQNYGLPVRL 270
            IVTAG  G IR FQN+GLPVR+
Sbjct: 727 VIVTAGLRGEIRTFQNFGLPVRI 749


>GSVIVT01034183001 assembled CDS
          Length = 346

 Score =  123 bits (309), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 63/127 (49%), Positives = 83/127 (65%), Gaps = 4/127 (3%)

Query: 16  DGRLQLHAQKCLQGKKKSASKRITGFQYFSSDPSRLMVTSADSKVRILDGVDVICKYRGI 75
           DG+L    Q  +Q KKKS +K+ITGFQ+   +PS +++TSADS++RI DG D+I K+RG 
Sbjct: 149 DGKLNQTGQIDIQNKKKSQTKKITGFQFAPGNPSEVLITSADSRIRIFDGSDIIHKFRGF 208

Query: 76  HNAGSQISALFTSGGTHIISASEDSNIYVWNYA----IKDGPVPRVKTNWACEHFFSNNA 131
            N  SQISA F+  G ++ISASEDS +YVW       I  G    + T  + EHF S + 
Sbjct: 209 RNTSSQISASFSQDGKYVISASEDSQVYVWRRDEVRHIGAGKGKSLVTTRSHEHFQSRDV 268

Query: 132 SVAIPWP 138
           SVAIPWP
Sbjct: 269 SVAIPWP 275