Jatropha Genome Database

JcCB0073371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0073371.10 - phase: 2 /partial
         (280 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009299001 assembled CDS                                       243   5e-65
GSVIVT01007165001 assembled CDS                                       158   3e-39

>GSVIVT01009299001 assembled CDS
          Length = 475

 Score =  243 bits (621), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 152/266 (57%), Positives = 183/266 (68%), Gaps = 40/266 (15%)

Query: 1   MFLNKENLGERMQDSPSLSMPPSNINMKSRENPFLNLEQQNSYQESSQIEFGLVNSDSLL 60
           +FLNKEN+GERMQ++  LS+  S I+ KS+EN F   +QQ  Y+ESS+  FGLV S+SLL
Sbjct: 235 IFLNKENVGERMQETQGLSILSSTIDQKSKENQFSLPKQQIPYEESSRAGFGLVPSNSLL 294

Query: 61  NPSQNGSSLISRNFGSSKELIGQETISQHSVRQFMDDWPKSQCDQSAVSWPPLDVQSNRT 120
             S++ S +  RNF                     DDWPK+Q D++A+SWP +D+QS+RT
Sbjct: 295 --SKSSSFMNCRNF---------------------DDWPKNQSDRTAISWPDIDLQSDRT 331

Query: 121 QLSISIPIASADFXXXXXXXNNEKIAPSPLRLSCDLDSIKMGTGTGIILNEQNQRHANWI 180
           QLSISIP+AS+DF                  LS + D I+MG G G +LNE NQR ANWI
Sbjct: 332 QLSISIPMASSDFI-----------------LSREFDPIQMGLGVGSVLNEPNQRQANWI 374

Query: 181 PIPWGTSMGGPLGEVLHNTNNTASECKNSSALNLLAEGWDCSPRLGSSPTGVLQKTTFHS 240
           PI W TSMGGPLGEVLH+TNN   +CKNSSALNL+ EGWD SPRLGSSPTGVLQKT+F S
Sbjct: 375 PISWETSMGGPLGEVLHSTNNNGGDCKNSSALNLMTEGWDGSPRLGSSPTGVLQKTSFGS 434

Query: 241 LSNSSAGSSPRAENNKNTEGASLSND 266
           LSNSSAGSSPRA N K  +GASL ND
Sbjct: 435 LSNSSAGSSPRAGNKKTNDGASLCND 460


>GSVIVT01007165001 assembled CDS
          Length = 558

 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 113/261 (43%), Positives = 146/261 (55%), Gaps = 50/261 (19%)

Query: 6   ENLGERMQDSPSLSMPPSNINMKSRENPFLNLEQQNSYQESSQIEFGLVNSDSLLNPSQN 65
           + L  R+Q+   LSM    +++KSR+ PF   +    ++ES Q EFG V+SDSLLNPS+ 
Sbjct: 334 DTLVNRLQEPQGLSMISPTVDLKSRDTPFSISKLPIPFEESPQSEFGFVSSDSLLNPSER 393

Query: 66  GSSLISRNFGSSKELIGQETISQHSVRQFMDDWPKSQCDQSAVSWPPLDVQSNRTQLSIS 125
           GS + SRN+    +   QET  QH  RQF+DDWPK Q ++S ++WP  +++S+ TQLSIS
Sbjct: 394 GSYMNSRNYTPFLDFSDQETQDQHPFRQFIDDWPKDQSNRSDIAWPE-ELKSDWTQLSIS 452

Query: 126 IPIASADFXXXXXXXNNEKIAPSPLRLSCDLDSIKMGTGTGIILNEQNQRHANWIPIPWG 185
           IP++S+DF         EK+A SPLRLS +LD                            
Sbjct: 453 IPMSSSDFSSSSSSPTQEKLAFSPLRLSRELD---------------------------- 484

Query: 186 TSMGGPLGEVLHNTNNTASECKNSSALNLLAEGWDCSPRLGSSPTGVLQKTTFHSLSNSS 245
                                 NSSALNL+ EGWD SP++GSSPTGVLQK TF SLSNSS
Sbjct: 485 ---------------------PNSSALNLMTEGWDGSPQIGSSPTGVLQKATFGSLSNSS 523

Query: 246 AGSSPRAENNKNTEGASLSND 266
           +GSSP  EN K  E AS   D
Sbjct: 524 SGSSPTTENKKIHERASHCED 544