Jatropha Genome Database

JcCB0072841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0072841.10 + phase: 0 
         (119 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008161001 assembled CDS                                        92   4e-20
GSVIVT01036535001 assembled CDS                                        92   4e-20
GSVIVT01003216001 assembled CDS                                        55   5e-09

>GSVIVT01008161001 assembled CDS
          Length = 514

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 59/81 (72%), Gaps = 11/81 (13%)

Query: 28  NSMV-SRSPMKLWILRAITTALLWTCVVQLMALGEMWGPRLLKGWPSCFSQS-------- 78
           +SMV SRS MKLW++RA T+ LLWTC+VQL ALG+MWGPR+LKGWPSCF+Q         
Sbjct: 31  SSMVTSRSRMKLWMIRATTSVLLWTCIVQLTALGDMWGPRVLKGWPSCFTQDSSAAASAL 90

Query: 79  DVHLS-SIPPKVVLPPKSKFK 98
           D  L  S PP+ VLPPK  +K
Sbjct: 91  DDKLGWSAPPR-VLPPKRVYK 110


>GSVIVT01036535001 assembled CDS
          Length = 520

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 57/75 (76%), Gaps = 4/75 (5%)

Query: 28  NSMVSRSPMKLWILRAITTALLWTCVVQLMALGEMWGPRLLKGWPSCFSQSDVHLSS--- 84
           N MV RS MK+W++R +T+ L+WTCVVQLMAL E WGPRLLKGWPSCFS SD+  S    
Sbjct: 46  NVMVCRSRMKVWMMRGMTSVLVWTCVVQLMALEETWGPRLLKGWPSCFSHSDLSSSLQLS 105

Query: 85  -IPPKVVLPPKSKFK 98
             PPK+VLPPK  +K
Sbjct: 106 PAPPKLVLPPKRVYK 120


>GSVIVT01003216001 assembled CDS
          Length = 504

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 7/58 (12%)

Query: 30 MVSRSPMKLWILRAITTALLWTCVVQLMALGEMWGPRLLKGWPSCFSQSDVHLSSIPP 87
          ++ R+ +++W +R  ++ LLWTC+VQL+A+GE+W PRLL G  S       HLS I P
Sbjct: 20 VIPRTRLQVWFIRVCSSILLWTCLVQLVAVGELWHPRLLTGISS-------HLSRITP 70