Jatropha Genome Database

JcCB0071491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0071491.10 - phase: 2 /partial
         (386 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009185001 assembled CDS                                       606   e-174
GSVIVT01029213001 assembled CDS                                       558   e-159
GSVIVT01031054001 assembled CDS                                       161   5e-40
GSVIVT01009925001 assembled CDS                                        75   7e-14
GSVIVT01018772001 assembled CDS                                        70   2e-12
GSVIVT01021650001 assembled CDS                                        62   6e-10

>GSVIVT01009185001 assembled CDS
          Length = 688

 Score =  606 bits (1562), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 283/341 (82%), Positives = 308/341 (90%)

Query: 1   YETGDHVGVYSENFDETVEEAAKLLGQPLDLLFSVYTDNEDGTPLGSSLPPAFPGPCTLR 60
           YETGDHVGVY+EN DETVEEA +LLGQPLDLLFS++TD +DGT LGSSLPP FPGPCT+R
Sbjct: 322 YETGDHVGVYAENCDETVEEAGRLLGQPLDLLFSIHTDKDDGTSLGSSLPPTFPGPCTIR 381

Query: 61  TALARYADLLNSPRKXXXXXXXXXXSDPSEAERLRFLASPQGKDEYAQWIVASQRSLLEV 120
           TALA YADLLNSPRK           +P EAERL+FLASPQGKDEY+QW+V SQRSLLEV
Sbjct: 382 TALACYADLLNSPRKAALSALAAHAIEPGEAERLKFLASPQGKDEYSQWVVGSQRSLLEV 441

Query: 121 MAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRFAPSRVHVTCALVYGPTPTGRIHKGV 180
           MAEFPSAKPPLGVFFAA+APRLQPRYYSISSSPR+A  RVHVTCALVYGP+PTGRIHKGV
Sbjct: 442 MAEFPSAKPPLGVFFAAIAPRLQPRYYSISSSPRYASHRVHVTCALVYGPSPTGRIHKGV 501

Query: 181 CSTWMKNAVPLERSSDCSWAPIFIRTSNFKLPSDPSVPIIMVGPGTGLAPFRGFLQERMA 240
           CSTWMKNAV LE+S + SWAPIFIR SNFKLP DP  PIIMVGPGTGLAPFRGFLQER+A
Sbjct: 502 CSTWMKNAVSLEKSHNSSWAPIFIRPSNFKLPVDPLTPIIMVGPGTGLAPFRGFLQERLA 561

Query: 241 LKQEGAQLGPALLFFGCRNRRMDFIYEDELNNFVEQGVISELIVAFSREGPQKEYVQHKM 300
           LK++G QLGPALLFFGCRNRRMDFIYEDELNNFVEQG++SELI+AFSREGPQKEYVQHKM
Sbjct: 562 LKEDGVQLGPALLFFGCRNRRMDFIYEDELNNFVEQGILSELILAFSREGPQKEYVQHKM 621

Query: 301 VQKAAQIWAIISQGGYLYVCGDAKGMARDVHRTLHNIVQEQ 341
           + +A+ IW IISQGGYLYVCGDAKGMA+DVHRTLH IVQEQ
Sbjct: 622 MDRASYIWNIISQGGYLYVCGDAKGMAKDVHRTLHTIVQEQ 662


>GSVIVT01029213001 assembled CDS
          Length = 660

 Score =  558 bits (1439), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 264/342 (77%), Positives = 296/342 (86%), Gaps = 2/342 (0%)

Query: 1   YETGDHVGVYSENFDETVEEAAKLLGQPLDLLFSVYTDNEDGTPL-GSSLPPAFPGPCTL 59
           YETGDHVGVY EN  ETVEEA +LLG   D+ FS++T+ EDGTPL GSSL P FP PCTL
Sbjct: 294 YETGDHVGVYCENLPETVEEAERLLGFSPDVYFSIHTEREDGTPLSGSSLSPPFP-PCTL 352

Query: 60  RTALARYADLLNSPRKXXXXXXXXXXSDPSEAERLRFLASPQGKDEYAQWIVASQRSLLE 119
           RTAL RYAD+L+SP+K          SDPSEA+RL++LASP GKDEYAQW+VASQRSLLE
Sbjct: 353 RTALTRYADVLSSPKKSALVALAAHASDPSEADRLKYLASPSGKDEYAQWVVASQRSLLE 412

Query: 120 VMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRFAPSRVHVTCALVYGPTPTGRIHKG 179
           +MAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSP+  PSR+HVTCALV    PTGRIHKG
Sbjct: 413 IMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPKMVPSRIHVTCALVCDKMPTGRIHKG 472

Query: 180 VCSTWMKNAVPLERSSDCSWAPIFIRTSNFKLPSDPSVPIIMVGPGTGLAPFRGFLQERM 239
           +CSTWMK AVPLE S DCSWAPIF+R SNFKLP+D SVPIIM+GPGTGLAPFRGFLQER 
Sbjct: 473 ICSTWMKYAVPLEESQDCSWAPIFVRQSNFKLPADTSVPIIMIGPGTGLAPFRGFLQERF 532

Query: 240 ALKQEGAQLGPALLFFGCRNRRMDFIYEDELNNFVEQGVISELIVAFSREGPQKEYVQHK 299
           ALK+ GA+LG ++LFFGCRNR+MD+IYEDELN FVE G +SELIVAFSREGP KEYVQHK
Sbjct: 533 ALKEAGAELGSSILFFGCRNRKMDYIYEDELNGFVESGALSELIVAFSREGPTKEYVQHK 592

Query: 300 MVQKAAQIWAIISQGGYLYVCGDAKGMARDVHRTLHNIVQEQ 341
           M++KA+ IW +ISQGGY+YVCGDAKGMARDVHRTLH I+QEQ
Sbjct: 593 MMEKASDIWNVISQGGYIYVCGDAKGMARDVHRTLHTILQEQ 634


>GSVIVT01031054001 assembled CDS
          Length = 632

 Score =  161 bits (408), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 100/258 (38%), Positives = 148/258 (57%), Gaps = 13/258 (5%)

Query: 90  EAERLRFLASPQGKDEYAQWIVASQRSLLEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSI 149
           E ERL++ ASP+G+D+  Q+    +R++LEV+ +FPS + P   +   + P L+ R YSI
Sbjct: 355 EKERLQYFASPEGRDDLYQYNQRERRTVLEVLEDFPSVQMPFE-WLVQLVPPLKKRAYSI 413

Query: 150 SSSPRFAPSRVHVTCALVYGPTPTGRIHKGVCSTWMKNAVPLERSSDCSWAPIFIRTSNF 209
           SSS    P+++H+T  +    TP  R   G+CS W+    P +     +W   FI+ S  
Sbjct: 414 SSSQLAHPNQLHLTVNVTPWTTPFKRKRTGLCSKWLAGLDPQQGVIIPAW---FIKGSLP 470

Query: 210 KLPSDPSVPIIMVGPGTGLAPFRGFLQERMALKQEGAQLGPALLFFGCRNRRMDFIYED- 268
             P   S+P+I++GPGTG APFRGF++ER A++       P L FFGC N   DF+Y D 
Sbjct: 471 APPP--SLPLILIGPGTGCAPFRGFVEER-AIQSRSGSTAPVLFFFGCWNEDNDFLYRDF 527

Query: 269 ELNNFVEQGVISE-----LIVAFSREGPQKEYVQHKMVQKAAQIWAIISQGGYLYVCGDA 323
            L++    GV+SE       VAFSR+ P K YVQHKM + + +IW ++ +G  +YV G +
Sbjct: 528 WLSHSRNGGVLSEEKGGGFCVAFSRDQPHKVYVQHKMRENSQRIWNLLCEGASIYVAGSS 587

Query: 324 KGMARDVHRTLHNIVQEQ 341
             M  DV      IV ++
Sbjct: 588 TKMPSDVFSCFEEIVSKE 605


>GSVIVT01009925001 assembled CDS
          Length = 363

 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 21/202 (10%)

Query: 145 RYYSISSSP--RFAPSRVHVTCA--LVYGPTPTGRIHKGVCSTWMKNAVPLERSSDCSW- 199
           R YSI+SS    F  ++    C   LVY     G I KGVCS ++ +  P    +D    
Sbjct: 142 RLYSIASSALGDFGDTKTVSLCVKRLVY-TNDQGEIVKGVCSNFLCDLKP---GADVKIT 197

Query: 200 APIFIRTSNFKLPSDPSVPIIMVGPGTGLAPFRGFLQERMALKQEGAQL-GPALLFFGCR 258
            P+        +P DP+  +IM+  GTG+APFR FL +    K E  +  G   LF G  
Sbjct: 198 GPV---GKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFFEKYEDYKFKGLGWLFLGVP 254

Query: 259 NRRMDFIYEDELNNFVEQGVIS-ELIVAFSREGP----QKEYVQHKMVQKAAQIWAIISQ 313
                 +Y+DE     E+   +  +  A SRE      +K Y+Q +M Q A ++W ++ +
Sbjct: 255 TTS-SLLYKDEFEKMKEKAPENFRVDYAVSREQTNEKGEKMYIQTRMAQYAEELWELLKK 313

Query: 314 GG-YLYVCGDAKGMARDVHRTL 334
              Y+Y+CG  KGM + +   +
Sbjct: 314 DNTYVYMCG-LKGMEKGIDDIM 334


>GSVIVT01018772001 assembled CDS
          Length = 362

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 20/217 (9%)

Query: 131 LGVFFAAVAPRLQP---RYYSISSSP--RFAPSRVHVTCA--LVYGPTPTGRIHKGVCST 183
           +GV    V    +P   R YSI+SS    F  S+    C   LVY     G + KGVCS 
Sbjct: 124 IGVIADGVDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY-TNENGELVKGVCSN 182

Query: 184 WMKNAVPLERSSDCSWAPIFIRTSNFKLPSDPSVPIIMVGPGTGLAPFRGFLQERMALKQ 243
           ++ +  P          P+        +P DP+  IIM+  GTG+APFR FL +    K 
Sbjct: 183 FLCDLKPGAEVKIT--GPV---GKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKH 237

Query: 244 EGAQL-GPALLFFGCRNRRMDFIYEDELNNFVEQGVISELIVAFSREGP----QKEYVQH 298
           E  +  G A LF G          E+      ++     L  A SRE      +K Y+Q 
Sbjct: 238 EDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKKPENFRLDFAVSREQSNAKGEKMYIQT 297

Query: 299 KMVQKAAQIWAIISQGG-YLYVCGDAKGMARDVHRTL 334
           +M + A ++W ++ +   Y+Y+CG  KGM + +   +
Sbjct: 298 RMAEYAEELWELLKKDNTYVYMCG-LKGMEKGIDDIM 333


>GSVIVT01021650001 assembled CDS
          Length = 377

 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 29/215 (13%)

Query: 145 RYYSISSS--PRFAPSRVHVTC---ALVYGPTPTGR---IHKGVCSTWMKNAVPLERSSD 196
           R YSI+S+    F   +    C   A+ Y P  TG+      GVCS ++ ++ P ++   
Sbjct: 152 RLYSIASTRYGDFFDGKTTTLCVRRAVYYDPV-TGKEDPSKNGVCSNYLCDSKPGDK--- 207

Query: 197 CSWAPIFIRTSNFKL----PSDPSVPIIMVGPGTGLAPFRGFLQERMALKQEGAQLGP-A 251
                I I   + K+      DP+   IM+  GTG+AP+RG+L+          + G  A
Sbjct: 208 -----IKITGPSGKIMLLPEDDPNATHIMIATGTGVAPYRGYLRRMFMEDVPSFRFGGLA 262

Query: 252 LLFFGCRNRRMDFIYEDELNNFVEQGVIS-ELIVAFSREGPQ----KEYVQHKMVQKAAQ 306
            LF G  N     +Y++E   +++          A SRE       K YVQ K+ + + +
Sbjct: 263 WLFLGVANTD-SLLYDNEFTKYLKDYPDQFRYDKALSREQKNRNGGKMYVQDKIEEYSDE 321

Query: 307 IWAIISQGGYLYVCGDAKGMARDVHRTLHNIVQEQ 341
           I+ ++  G ++Y CG  KGM   +  TL  +  ++
Sbjct: 322 IFKLLDGGAHIYFCG-LKGMMPGIQETLKRVADQR 355