Jatropha Genome Database

JcCB0071481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0071481.10 + phase: 1 /partial
         (144 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021790001 assembled CDS                                       145   9e-36
GSVIVT01000714001 assembled CDS                                        76   5e-15

>GSVIVT01021790001 assembled CDS
          Length = 383

 Score =  145 bits (365), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 100/131 (76%), Gaps = 6/131 (4%)

Query: 19  NIPVDSKEYQAFLKSQLSLACAAVALSRAPFLKSQDSPARADSGSQASNTSQSGSHVP-K 77
           N+P+DS+EYQAFLKS+L+LACAAVALSRA F+K QDS A AD+GSQAS TSQ  S  P K
Sbjct: 95  NVPIDSEEYQAFLKSRLNLACAAVALSRASFVKPQDSAALADTGSQASKTSQLRSQAPCK 154

Query: 78  GAGNDLSRPQDTDANGLVGIHS--STQKKSGVPMKSTTSGSSREQSEDDENEGETEM--N 133
           G+G DLS   D +A G +GI S  + QKK+G  ++ TTS SSRE S+DDE EGETE   N
Sbjct: 155 GSGYDLSGAPDKEAGGPLGIPSLPAMQKKAGAQLRPTTSESSREHSDDDEVEGETETIEN 214

Query: 134 MKDPADAKRVR 144
           M DPADAKRVR
Sbjct: 215 M-DPADAKRVR 224


>GSVIVT01000714001 assembled CDS
          Length = 420

 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/141 (45%), Positives = 78/141 (55%), Gaps = 21/141 (14%)

Query: 21  PVDSKEYQAFLKSQLSLACAAVALSRAPFLKSQDSPAR-----------ADSGSQASNTS 69
           PVD   +QAFL+ +L LACAAVALSR   +K Q+S  +           A S    S  S
Sbjct: 79  PVD---HQAFLRKRLDLACAAVALSRESGVKPQESAVKPQESAVKPQESALSMQTQSKPS 135

Query: 70  QSGSHVPKGA--GNDLSRPQDTDANGLVGIHSS--TQKKSGVPMKSTTSGSSREQSEDDE 125
           Q GS        G+     QD    G +GI +S  +Q KSG  + +TTSGSSRE S+DDE
Sbjct: 136 QLGSQAVATVDPGHVFPITQDKVEGGSLGIPASATSQNKSGAQVITTTSGSSRELSDDDE 195

Query: 126 NEGETEM--NMKDPADAKRVR 144
            EGET+   NM DPAD KR R
Sbjct: 196 LEGETDTTGNM-DPADEKRAR 215