Jatropha Genome Database

JcCB0071431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0071431.10 - phase: 0 
         (322 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009185001 assembled CDS                                       376   e-104
GSVIVT01029213001 assembled CDS                                       355   2e-98
GSVIVT01031054001 assembled CDS                                        72   3e-13
GSVIVT01014385001 assembled CDS                                        64   1e-10

>GSVIVT01009185001 assembled CDS
          Length = 688

 Score =  376 bits (965), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/320 (63%), Positives = 244/320 (76%), Gaps = 3/320 (0%)

Query: 3   SDLVRYVESVLGVSLGGSVTDSLLLIVTTSVAVIVGLFVFLLKKSSDRSKEXXXXXXXXS 62
           S+L+  VE+ LGVSLG   ++S ++I+TT+VAVI+GL +F+ + SSDR ++        +
Sbjct: 5   SNLINTVEAFLGVSLG---SESAVVILTTTVAVILGLLIFVWRISSDRGRDVKPLVVPKA 61

Query: 63  LTVKKEEDDAEALAGKTRVIIFYGTQTGTAEGFAKSLSEEIKARYXXXXXXXXXXXXXXX 122
           + +  EED+AEA  GKT+V +F+GTQTGTAEGFAK+L+EEIKARY               
Sbjct: 62  VAIPAEEDEAEAAVGKTKVTVFFGTQTGTAEGFAKALAEEIKARYDKATIKVVDLDDYAV 121

Query: 123 XXXXXXXXXXXXTLSFFMVATYGDGEPTDNAARFYKWLTEENERGVWLQQLTFGVFGLGN 182
                        L+FFM+ATYGDGEPTDNAARFYKW TE  ER  WLQQLT+GVFGLGN
Sbjct: 122 DDDQYEEKLKKEALAFFMLATYGDGEPTDNAARFYKWFTEGKEREAWLQQLTYGVFGLGN 181

Query: 183 RQYEHFNKIAKVLDEQLSEQGAKRLIPVGLGDDDQCIEDDFSAWKELLWPELDQILRDED 242
           RQYEHFNKIAKV+DE LSEQGAKRL+P GLGDDDQCIEDDF+AW+ELLWPELD +LRDED
Sbjct: 182 RQYEHFNKIAKVVDELLSEQGAKRLVPAGLGDDDQCIEDDFAAWRELLWPELDLLLRDED 241

Query: 243 DVNTPSTPYTAAILEYRVVIHDASMTSFDDKSSHLANGNTVFDIHHPCRANVAVQKELHK 302
           D++  STPYTA I EYRVVIHD  +TS +DK  ++ANGN  FDIHHPCR NVAVQ+ELH 
Sbjct: 242 DISAVSTPYTAVIPEYRVVIHDPIVTSCEDKFLNMANGNASFDIHHPCRVNVAVQRELHT 301

Query: 303 PESDRSCIHLEFDVAGTGIT 322
            ESDRSCIHLEFD +GTGIT
Sbjct: 302 LESDRSCIHLEFDTSGTGIT 321


>GSVIVT01029213001 assembled CDS
          Length = 660

 Score =  355 bits (910), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 180/296 (60%), Positives = 212/296 (71%), Gaps = 3/296 (1%)

Query: 27  LIVTTSVAVIVGLFVFLLKKSSDRSKEXXXXXXXXSLTVKKEEDDAEALAGKTRVIIFYG 86
           +I+TTS+AV++G  V L+ + S + K+         L VK  E   E   GK +V IF+G
Sbjct: 1   MILTTSIAVLIGCVVVLIWRRSGQ-KQSKTPEPPKPLIVKDLE--VEVDDGKQKVTIFFG 57

Query: 87  TQTGTAEGFAKSLSEEIKARYXXXXXXXXXXXXXXXXXXXXXXXXXXXTLSFFMVATYGD 146
           TQTGTAEGFAK+L+EE KARY                           TL+FF +ATYGD
Sbjct: 58  TQTGTAEGFAKALAEEAKARYEKAIFKVVDLDDYAGDDDEYEEKLKKETLAFFFLATYGD 117

Query: 147 GEPTDNAARFYKWLTEENERGVWLQQLTFGVFGLGNRQYEHFNKIAKVLDEQLSEQGAKR 206
           GEPTDNAARFYKW  E  ERG WLQ L +GVFGLGNRQYEHFNK+AKV+D+ ++EQG KR
Sbjct: 118 GEPTDNAARFYKWFAEGKERGEWLQNLKYGVFGLGNRQYEHFNKVAKVVDDIITEQGGKR 177

Query: 207 LIPVGLGDDDQCIEDDFSAWKELLWPELDQILRDEDDVNTPSTPYTAAILEYRVVIHDAS 266
           ++PVGLGDDDQCIEDDF+AW+ELLWPELDQ+LRDEDD  T STPYTAA+LEYRVV HD  
Sbjct: 178 IVPVGLGDDDQCIEDDFAAWRELLWPELDQLLRDEDDATTVSTPYTAAVLEYRVVFHDPE 237

Query: 267 MTSFDDKSSHLANGNTVFDIHHPCRANVAVQKELHKPESDRSCIHLEFDVAGTGIT 322
             S  DKS   ANG+TV D  HPCRANVAV+KELH P SDRSC HLEFD++GTG+T
Sbjct: 238 GASLQDKSWGSANGHTVHDAQHPCRANVAVRKELHTPASDRSCTHLEFDISGTGLT 293


>GSVIVT01031054001 assembled CDS
          Length = 632

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 114/265 (43%), Gaps = 30/265 (11%)

Query: 78  KTRVIIFYGTQTGTAEGFAKSLSEEIKARYXXXXXXXXXXXXXXXXXXXXXXXXXXXTLS 137
           K +++I Y +QTG A   A+ ++ E + R                               
Sbjct: 8   KQKLLILYASQTGNALDAAERIAREAERRGCPVTLLSIDCFNAGSLPYEENV-------- 59

Query: 138 FFMVATYGDGEPTDNAARFYKWLTEENERGVWLQQLTFGVFGLGNRQYEHFNKIAKVLDE 197
            F+V+T G G+  D+   F+K+L + N    WL+ + + VFGLG+  Y+ +N +AK LD+
Sbjct: 60  IFVVSTTGQGDTPDSMKAFWKFLLQRNLSQRWLEGVHYAVFGLGDSGYQKYNFVAKKLDK 119

Query: 198 QLSEQGAKRLIPVGLGDDDQC--IEDDFSAWKELLWPEL------------DQILRDEDD 243
           +L + GA  ++  GLGDD      E     W   LW  L            D +++D   
Sbjct: 120 RLLDLGAVAIVERGLGDDQHPSGYEGALDPWMSSLWNTLSKMNPKFFPNGIDFLIQDAHL 179

Query: 244 VNTPSTPYTAAILEYRVVIH---DASMTSFD---DKSSHLANGNTVFDIHHP-CRANVAV 296
           ++ P    T   ++ +V  H   D+ +   +   ++   +  G    D + P C   +  
Sbjct: 180 IDPPKVQITYHDVD-KVHSHFSTDSDLKCIEMQIERVRSMHPGKFSRDKNRPDCFLRMVE 238

Query: 297 QKELHKPESDRSCIHLEFDVAGTGI 321
              L +   +++ +H+EF+V  + I
Sbjct: 239 NHSLTRAGCEKNVLHIEFEVLSSAI 263


>GSVIVT01014385001 assembled CDS
          Length = 136

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 1/101 (0%)

Query: 139 FMVATYGDGEPTDNAARFYKWLTEENERGVWLQQLTFGVFGLGNRQYEHFNKIAKVLDEQ 198
           F+V+T G G+  D+   F+K+L + N    WL+ + + VFGLG+  Y+ +N +A+ LD++
Sbjct: 32  FVVSTTGQGDTPDSMKAFWKFLLQRNLNQWWLEGVHYAVFGLGDSGYQKYNFVAEKLDKR 91

Query: 199 LSEQGAKRLIPVGLGDDDQCIEDDFSAWKELLWPELDQILR 239
           L + GA  ++  GLGDD          W+ + +P L ++L+
Sbjct: 92  LLDLGAVAIVERGLGDDQHPSGFILERWR-ITFPMLIKMLQ 131